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| author | hakangunturkun | 2020-09-07 22:35:17 -0500 |
|---|---|---|
| committer | hakangunturkun | 2020-09-07 22:35:17 -0500 |
| commit | a637889f13c2151303998e411dc81f3196a974f6 (patch) | |
| tree | f593bb635e759889109504405d2abc3e31af9008 /utility/ebi_to_ratspub.sh | |
| parent | 35179dec9aa1926102ad2ddbbd5b8ad2882be92e (diff) | |
| download | genecup-a637889f13c2151303998e411dc81f3196a974f6.tar.gz | |
last version
Diffstat (limited to 'utility/ebi_to_ratspub.sh')
| -rw-r--r-- | utility/ebi_to_ratspub.sh | 9 |
1 files changed, 9 insertions, 0 deletions
diff --git a/utility/ebi_to_ratspub.sh b/utility/ebi_to_ratspub.sh new file mode 100644 index 0000000..847960f --- /dev/null +++ b/utility/ebi_to_ratspub.sh @@ -0,0 +1,9 @@ +# ./gwas_catalog_v1.0.2-associations_e100_r2020-08-05.tsv + + +cut -f 2,8,14,15,28,35,22 $1 |grep -P -i "schizo|autism|smoking|addiction|cocaine|opioid|morphin|cannabis|depression|anxiety|bipolar|behavior|\bmental|amphetamine|nicotine|chronic\ obstructive|psychiatric|methadone|heroin|alcohol|drug dependence"|grep -v -i intergenic |grep -v BMI >addiction_gwas.tsv + +python ./process_gwas.py > ../gwas_addiction.tab + +echo "../gwas_addiction.tab updated" + |