From a637889f13c2151303998e411dc81f3196a974f6 Mon Sep 17 00:00:00 2001
From: hakangunturkun
Date: Mon, 7 Sep 2020 22:35:17 -0500
Subject: last version

---
 utility/ebi_to_ratspub.sh | 9 +++++++++
 1 file changed, 9 insertions(+)
 create mode 100644 utility/ebi_to_ratspub.sh

(limited to 'utility/ebi_to_ratspub.sh')

diff --git a/utility/ebi_to_ratspub.sh b/utility/ebi_to_ratspub.sh
new file mode 100644
index 0000000..847960f
--- /dev/null
+++ b/utility/ebi_to_ratspub.sh
@@ -0,0 +1,9 @@
+# ./gwas_catalog_v1.0.2-associations_e100_r2020-08-05.tsv
+
+
+cut -f 2,8,14,15,28,35,22  $1 |grep -P -i "schizo|autism|smoking|addiction|cocaine|opioid|morphin|cannabis|depression|anxiety|bipolar|behavior|\bmental|amphetamine|nicotine|chronic\ obstructive|psychiatric|methadone|heroin|alcohol|drug dependence"|grep -v -i intergenic |grep -v BMI >addiction_gwas.tsv
+
+python ./process_gwas.py > ../gwas_addiction.tab
+
+echo "../gwas_addiction.tab updated"
+
-- 
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