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require 'minitest/autorun'
require 'lib/test-helpers'
class TestQuick < MiniTest::Test
include TestHelpers
def setup
end
def test_linear_model
assert gemma("-g ./example/mouse_hs1940.geno.txt.gz \
-p ./example/mouse_hs1940.pheno.txt \
-n 1 \
-a ./example/mouse_hs1940.anno.txt \
-lm \
-o mouse_hs1940_CD8_lm")
expect('output/mouse_hs1940_CD8_lm.assoc.txt',[[2,1,"rs3707673"],
[2,10,"5.252187e-05"],
[3,9,"3.909916e-02"]])
end
end
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