require 'minitest/autorun' require 'lib/test-helpers' class TestQuick < MiniTest::Test include TestHelpers def setup end def test_linear_model assert gemma("-g ./example/mouse_hs1940.geno.txt.gz \ -p ./example/mouse_hs1940.pheno.txt \ -n 1 \ -a ./example/mouse_hs1940.anno.txt \ -lm \ -o mouse_hs1940_CD8_lm") expect('output/mouse_hs1940_CD8_lm.assoc.txt',[[2,1,"rs3707673"], [2,10,"5.252187e-05"], [3,9,"3.909916e-02"]]) end end