diff options
| author | Pjotr Prins | 2025-11-27 09:36:16 +0100 |
|---|---|---|
| committer | Pjotr Prins | 2025-11-27 09:36:16 +0100 |
| commit | c5da663c56e31d1beb42972665947a5aa5b35cfe (patch) | |
| tree | 8e837658486730111e410afa434aad4bf742a08b /src | |
| parent | cf4f018bd350c8202aef2ee085a2c536097895b4 (diff) | |
| download | pangemma-c5da663c56e31d1beb42972665947a5aa5b35cfe.tar.gz | |
Minor tweaks
Diffstat (limited to 'src')
| -rw-r--r-- | src/lmm.cpp | 5 | ||||
| -rw-r--r-- | src/lmm.h | 2 |
2 files changed, 3 insertions, 4 deletions
diff --git a/src/lmm.cpp b/src/lmm.cpp index 1ef3990..12e4edb 100644 --- a/src/lmm.cpp +++ b/src/lmm.cpp @@ -96,7 +96,7 @@ void LMM::CopyToParam(PARAM &cPar) { cPar.time_UtX = time_UtX; cPar.time_opt = time_opt; - cPar.ng_test = ng_test; + cPar.ng_test = ng_test; // number of markers tested return; } @@ -1723,7 +1723,6 @@ void LMM::Analyze(std::function< SnpNameValues(size_t) >& fetch_snp, gsl_matrix_set_zero(Xlarge); for (size_t i = 0; i < l; i++) { - ProgressBar("GWA compute ", i, l - 1); // for each snp batch item extract transformed genotype: gsl_vector_view UtXlarge_col = gsl_matrix_column(UtXlarge, i); gsl_vector_safe_memcpy(Utx, &UtXlarge_col.vector); @@ -1851,7 +1850,7 @@ void LMM::Analyze(std::function< SnpNameValues(size_t) >& fetch_snp, } batch_compute(c % msize); - ProgressBar("Computed ", num_snps - 1, num_snps - 1); + ProgressBar("Reading SNPS", num_snps - 1, num_snps - 1); // cout << "Counted SNPs " << c << " sumStat " << sumStat.size() << endl; cout << endl; checkpoint_nofile("end-lmm-analyze"); diff --git a/src/lmm.h b/src/lmm.h index 736c679..596c11b 100644 --- a/src/lmm.h +++ b/src/lmm.h @@ -30,7 +30,7 @@ using namespace std; -#define LMM_BATCH_SIZE 20000 // used for batch processing +#define LMM_BATCH_SIZE 5000 // used for batch processing class FUNC_PARAM { |