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2017-10-13Fix header for not showing sePjotr Prins
2017-10-13Disable se for lmm=2, see https://github.com/genetics-statistics/GEMMA/issues/81Pjotr Prins
2017-10-13Fixed mean and iterations in Plink - now this worksPjotr Prins
2017-10-13Progressbar updatePjotr Prins
2017-10-13Consolidate into ProgressBar into one function and related updatesPjotr Prins
2017-10-13Fix embarrassing bug that broke BIMBAM for larger datasets - found it when po...Pjotr Prins
2017-10-13debug message: minor changePjotr Prins
2017-10-13Bumped up version.Peter Carbonetto
2017-10-13Change ulong type to long.Peter Carbonetto
2017-10-13Fixed warning with assignment in if statement.Peter Carbonetto
2017-10-13Make sure __ASSERT_VOID_CAST worksPjotr Prins
2017-10-13Removing warnings on debug.h assignmentPjotr Prins
2017-10-06LMM: small cleanup and default to NaN initializationPjotr Prins
2017-10-06LMM: BIMBAM and PLINK share same LMM code - test passPjotr Prins
2017-10-06LMM: lifter genotype parsing for BIMBAM. All tests pass.Pjotr Prins
2017-10-06LMM: lifter line noPjotr Prins
2017-10-06LMM: lifted out file accessPjotr Prins
2017-10-06Oops: fixed logic problem after removing Oxford dataPjotr Prins
2017-10-05Removed Oxford format as per https://github.com/genetics-statistics/GEMMA/iss...Pjotr Prins
2017-10-05LMM: skip beta (again) with LRTPjotr Prins
2017-10-05AddressesPjotr Prins
2017-10-05Adding debug statements on entering functions and added test for issue 58Pjotr Prins
2017-10-05Added a few checks and infoPjotr Prins
2017-09-14Merge pull request #85 from prasunanand/gsl_version_patchPjotr Prins
2017-09-14check GSL_MINOR_VERSION while compilingprasun
2017-09-12Show GSL and Eigen versions in .log outputPjotr Prins
2017-08-28param.cpp: Set error on errorPjotr Prins
2017-08-27-aPjotr Prins
2017-08-27Removed large sections of commented out codePjotr Prins
2017-08-26LULndet: remove bad enforcePjotr Prins
2017-08-26Debug: only output check on -debugPjotr Prins
2017-08-26Tests and enforces added related to https://github.com/genetics-statistics/GE...Pjotr Prins
2017-08-22Fix typo intecept -> interceptPjotr Prins
2017-08-22EigenDecomp: also show warning on multiple zero valuesPjotr Prins
2017-08-22Fixes matrix checks - looking saner nowPjotr Prins
2017-08-21Added more detailed description of -widv option following Xiang's description...Peter Carbonetto
2017-08-21Bumped up version.Peter Carbonetto
2017-08-20Added checks for KPjotr Prins
2017-08-15Fixes output file with kinship has extra columnPjotr Prins
2017-08-14Tests and fixes https://github.com/genetics-statistics/GEMMA/issues/26Pjotr Prins
2017-08-13Fixes https://github.com/genetics-statistics/GEMMA/issues/64Pjotr Prins
2017-08-07Bumped up development version.Peter Carbonetto
2017-08-03LOCO is implemented in GEMMA for the BIMBAM format. Pass in the -locoPjotr Prins
2017-08-02Added section on contributing and coding style and fixed compilationPjotr Prins
2017-08-02Massive patch using LLVM coding style. It was generated with:Pjotr Prins
2017-07-27Updated version to 0.97.Peter Carbonetto
2017-07-21Removed some more commented-out code from mvlmm.cpp.Peter Carbonetto
2017-07-19Removed some commented out code from mvlmm.cpp.Peter Carbonetto
2017-07-07Merge pull request #51 from genenetwork/spacingPeter Carbonetto
2017-07-07Bumped up version; added Pjotr to README.Peter Carbonetto
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