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PanGEMMA: Genome-wide Efficient Mixed Model Association
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2025-12-03
Some output
Pjotr Prins
2025-12-03
Trying to optimize mdb read-ahead
Pjotr Prins
2025-12-03
Compiler warnings and some output for K
Pjotr Prins
2025-12-02
Started generating output
Pjotr Prins
2025-12-02
All SNPs computed
Pjotr Prins
2025-12-01
Code loads markers - getting ready to compute
Pjotr Prins
2025-12-01
Copy function so I can modify
Pjotr Prins
2025-12-01
Set up lmdb reading of geno file again
Pjotr Prins
2025-12-01
Refactoring
Pjotr Prins
2025-12-01
Almost ready to run GWA
Pjotr Prins
2025-12-01
Refactoring
Pjotr Prins
2025-12-01
mdb gwa
Pjotr Prins
2025-12-01
Wiring in mdb GWA
Pjotr Prins
2025-12-01
Toyed a bit with SNP filtering. I think my unfiltered approach for computing ↵
Pjotr Prins
GRM is probably more accurate and faster without any SNP filtering.
2025-11-30
Extracting MAF computation
Pjotr Prins
2025-11-30
Write out K
Pjotr Prins
2025-11-30
K: reads geno mdb
Pjotr Prins
2025-11-30
Fetch ni_total from lmdb
Pjotr Prins
2025-11-29
Introduce lmdb++
Pjotr Prins
2025-11-28
Toying with lmdbi
Pjotr Prins
2025-11-28
Simplify a bit and make guix.scm work without running out of RAM
Pjotr Prins
2025-11-28
working on mdb
Pjotr Prins
2025-11-28
Prepare for using mdb geno in a test
Pjotr Prins
2025-11-27
Introduce first test
Pjotr Prins
2025-11-27
Update copyrights
Pjotr Prins
2025-11-27
Get rid of compiler warning for bin
Pjotr Prins
2025-11-27
Changing namings to bimbam to make clearer
Pjotr Prins
2025-11-27
No one uses these uchar versions
Pjotr Prins
2025-11-27
Display banner and version info
Pjotr Prins
2025-11-27
Minor tweaks
Pjotr Prins
2025-11-26
Fix progress bar and test larger file
Pjotr Prins
2025-11-26
openblas speed on par
Pjotr Prins
2025-11-24
Added profiler and figured speed regression with openblas
Pjotr Prins
2025-11-23
Comments
Pjotr Prins
2025-11-23
Adding comments
Pjotr Prins
2025-11-23
Replace G with K to avoid (my) confusion
Pjotr Prins
2025-11-22
Call guile code inline from C
Pjotr Prins
2025-11-22
Prevent memory leak
Pjotr Prins
2025-11-22
Introduce libguile and drop version generator
Pjotr Prins
2025-11-20
Comments
Pjotr Prins
2025-11-20
disable segfpe checks because they somehow are not linked in. Maybe re-add ↵
Pjotr Prins
later.
2025-06-27
First working Guile binding
Pjotr Prins
2025-06-27
Create gemmalib and get ready with a guile test
Pjotr Prins
2025-06-22
Add comment
Pjotr Prins
2025-01-04
Added checkpoints for file readers
Pjotr Prins
2025-01-04
Show checkpoints passed with -debug switch
Pjotr Prins
2025-01-03
Adding support for checkpoints and relevant documentation
Pjotr Prins
2024-12-31
Adding note because of mvlmm performance test failure
Pjotr Prins
2024-12-09
Expanded error message
Pjotr Prins
2024-08-17
mvlmm: Dump the initial data.
Artyom Bologov
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