aboutsummaryrefslogtreecommitdiff
path: root/src/lmm.cpp
AgeCommit message (Collapse)Author
2024-08-16gemma,lmm,mvlmm: Add data debug printing everywhere.Artyom Bologov
2022-02-15Control P_yy round-off.Pjotr Prins
Fixes #210
2021-08-25Add -lmm 9 test and make sure other file formats workPjotr Prins
2021-08-25iter could go out of bounds in CalcLambda - may explain github #243Pjotr Prins
2021-08-25Make sure P_yy=0 does not fail. Fix undefined iter in loop. Make sure there ↵Pjotr Prins
is cleanup on exit
2021-08-22Disable round-off correctionPjotr Prins
2021-08-14Aim at fix ofPjotr Prins
GSL ERROR: function value is not finite in brent.c at line 202 errno 9 #210
2020-12-15Introduced `-lmm 9` switch for gemma to capture additive effect togetherPjotr Prins
without the log likelihood without adding computation time. See also #237 Closes #237
2020-12-15Undo function changePjotr Prins
2020-12-15Using M_LLM? modesPjotr Prins
2020-12-15Using M_LLM? modesPjotr Prins
2020-12-15Removed logl_H1 column for -lmm 3 - see also #237Pjotr Prins
2020-12-15No need to pass lambda by addressPjotr Prins
2020-10-01These variables are introduced in DEBUG modePjotr Prins
2020-09-29Fixing Travis build, remove gcc warnings and bump versionPjotr Prins
2020-05-22Fixes for gcc (GCC) 10.1.0Pjotr Prins
Started to remove eigenlib (again)
2018-12-10Fixes regression introduced by sharing plink algorithm with BIMBAM.Pjotr Prins
closes #188
2018-09-15Remove noisy batch_compute messagePjotr Prins
2018-09-06Sometimes a value gets negative zero causing a NaN on the sqrt.Pjotr Prins
Closes #61
2018-09-06More debugging and a performance checkPjotr Prins
2018-09-06More debugging info and raise SIGINT instead of exitPjotr Prins
2018-09-06Further debuggingPjotr Prins
2018-09-01CalcPab notesPjotr Prins
2018-08-31More testingPjotr Prins
2018-08-31Improving readabilityPjotr Prins
2018-08-31Continue debugging calcpabPjotr Prins
2018-08-30Debugging calcPabPjotr Prins
2018-08-26More value checking and bounds checkingPjotr Prins
2018-08-25Number format checking in strict mode. Also fixes #149Pjotr Prins
2018-08-25segfpe handlingPjotr Prins
2018-06-29Merge branch 'master' of github.com:genetics-statistics/GEMMAPjotr Prins
2018-02-28renamed import io.h to gemma_io.hDannyArends
2018-01-27Extra error info on strtok parsing failure - should help supportPjotr Prins
2017-12-12Updated copyright infoPjotr Prins
2017-12-08Legacy mode does not show logl_H1 column in outputPjotr Prins
2017-12-06Some cleanup on matrix checkingPjotr Prins
2017-11-30Fixed never-ending run when analyzing only a single SNP, refPjotr Prins
https://groups.google.com/forum/#!topic/gemma-discussion/a-ommTiucC8
2017-11-22Remove compiler warnings and add check is_nanPjotr Prins
2017-11-15Nans: introducing checking on mem freePjotr Prins
2017-11-11Fix compiler warningsPjotr Prins
2017-10-26Get rid of compiler warningPjotr Prins
2017-10-23Travis-ci:Pjotr Prins
- Disabled gcc-6 since we develop with later tools anyway - Turned the release test into a simple integration test - Adding MacOSX on Travis-ci Tests: Adding tests for Plink w. LOCO Safety: Introduce strtok_safe to get rid of segfaults
2017-10-18Tests still pass with safe_alloc (which sets the buffers to NaNs on allocation)Pjotr Prins
2017-10-13Replacing first dgemm - tests failPjotr Prins
2017-10-13OpenBlas: preparing for dgemm usePjotr Prins
2017-10-13Fix header for not showing sePjotr Prins
2017-10-13Disable se for lmm=2, see https://github.com/genetics-statistics/GEMMA/issues/81Pjotr Prins
2017-10-13Fixed mean and iterations in Plink - now this worksPjotr Prins
2017-10-13Fix embarrassing bug that broke BIMBAM for larger datasets - found it when ↵Pjotr Prins
porting Plink to the new Analyze function
2017-10-06LMM: small cleanup and default to NaN initializationPjotr Prins
generated by cgit v1.2.3 (git 2.44.0) at 2025-01-18 10:15:38 +0000