about summary refs log tree commit diff
path: root/src/lmm.cpp
AgeCommit message (Collapse)Author
2025-12-09Allow skipping out of loop with LOCO HEAD masterPjotr Prins
2025-12-09Compute K for GbPjotr Prins
2025-12-06LOCO support works for mdbPjotr Prins
2025-12-06Adding loco support for mdbPjotr Prins
2025-12-06For LOCO we wont use gwassnpsPjotr Prins
2025-12-05Add support for Gb genotype byte representationPjotr Prins
2025-12-05Output is on par with earlier gemma - only allele values are missingPjotr Prins
2025-12-05Rename to MarkerInfoPjotr Prins
2025-12-05Replace tuple with aggregatePjotr Prins
2025-12-05Compute maf againPjotr Prins
2025-12-04Output has same values as original!Pjotr Prins
2025-12-04Pass in markerinfoPjotr Prins
2025-12-04Unpack markerPjotr Prins
2025-12-04keysPjotr Prins
2025-12-03Working on outputPjotr Prins
2025-12-03Writing output local to functionPjotr Prins
2025-12-03Pass in snp infoPjotr Prins
2025-12-03Unpack key to get chr,pos,markerPjotr Prins
2025-12-03Some outputPjotr Prins
2025-12-03Trying to optimize mdb read-aheadPjotr Prins
2025-12-02Started generating outputPjotr Prins
2025-12-02All SNPs computedPjotr Prins
2025-12-01Code loads markers - getting ready to computePjotr Prins
2025-12-01Copy function so I can modifyPjotr Prins
2025-12-01Set up lmdb reading of geno file againPjotr Prins
2025-12-01RefactoringPjotr Prins
2025-12-01Wiring in mdb GWAPjotr Prins
2025-11-27Update copyrightsPjotr Prins
2025-11-27Minor tweaksPjotr Prins
2025-11-26Fix progress bar and test larger filePjotr Prins
2025-11-26openblas speed on parPjotr Prins
2025-11-23Adding commentsPjotr Prins
2025-11-20CommentsPjotr Prins
2024-08-16gemma,lmm,mvlmm: Add data debug printing everywhere.Artyom Bologov
2022-02-15Control P_yy round-off.Pjotr Prins
Fixes #210
2021-08-25Add -lmm 9 test and make sure other file formats workPjotr Prins
2021-08-25iter could go out of bounds in CalcLambda - may explain github #243Pjotr Prins
2021-08-25Make sure P_yy=0 does not fail. Fix undefined iter in loop. Make sure there ↵Pjotr Prins
is cleanup on exit
2021-08-22Disable round-off correctionPjotr Prins
2021-08-14Aim at fix ofPjotr Prins
GSL ERROR: function value is not finite in brent.c at line 202 errno 9 #210
2020-12-15Introduced `-lmm 9` switch for gemma to capture additive effect togetherPjotr Prins
without the log likelihood without adding computation time. See also #237 Closes #237
2020-12-15Undo function changePjotr Prins
2020-12-15Using M_LLM? modesPjotr Prins
2020-12-15Using M_LLM? modesPjotr Prins
2020-12-15Removed logl_H1 column for -lmm 3 - see also #237Pjotr Prins
2020-12-15No need to pass lambda by addressPjotr Prins
2020-10-01These variables are introduced in DEBUG modePjotr Prins
2020-09-29Fixing Travis build, remove gcc warnings and bump versionPjotr Prins
2020-05-22Fixes for gcc (GCC) 10.1.0Pjotr Prins
Started to remove eigenlib (again)
2018-12-10Fixes regression introduced by sharing plink algorithm with BIMBAM.Pjotr Prins
closes #188
generated by cgit-pink 1.4.1 (git 2.36.1) at 2026-02-07 06:57:26 +0000