Age | Commit message (Expand) | Author |
2021-08-14 | Aim at fix of•••GSL ERROR: function value is not finite in brent.c at line 202 errno 9
#210
| Pjotr Prins |
2020-12-15 | Introduced `-lmm 9` switch for gemma to capture additive effect together•••without the log likelihood without adding computation time. See also #237
Closes #237
| Pjotr Prins |
2020-12-15 | Undo function change | Pjotr Prins |
2020-12-15 | Using M_LLM? modes | Pjotr Prins |
2020-12-15 | Using M_LLM? modes | Pjotr Prins |
2020-12-15 | Removed logl_H1 column for -lmm 3 - see also #237 | Pjotr Prins |
2020-12-15 | No need to pass lambda by address | Pjotr Prins |
2020-10-01 | These variables are introduced in DEBUG mode | Pjotr Prins |
2020-09-29 | Fixing Travis build, remove gcc warnings and bump version | Pjotr Prins |
2020-05-22 | Fixes for gcc (GCC) 10.1.0•••Started to remove eigenlib (again)
| Pjotr Prins |
2018-12-10 | Fixes regression introduced by sharing plink algorithm with BIMBAM.•••closes #188
| Pjotr Prins |
2018-09-15 | Remove noisy batch_compute message | Pjotr Prins |
2018-09-06 | Sometimes a value gets negative zero causing a NaN on the sqrt.•••Closes #61
| Pjotr Prins |
2018-09-06 | More debugging and a performance check | Pjotr Prins |
2018-09-06 | More debugging info and raise SIGINT instead of exit | Pjotr Prins |
2018-09-06 | Further debugging | Pjotr Prins |
2018-09-01 | CalcPab notes | Pjotr Prins |
2018-08-31 | More testing | Pjotr Prins |
2018-08-31 | Improving readability | Pjotr Prins |
2018-08-31 | Continue debugging calcpab | Pjotr Prins |
2018-08-30 | Debugging calcPab | Pjotr Prins |
2018-08-26 | More value checking and bounds checking | Pjotr Prins |
2018-08-25 | Number format checking in strict mode. Also fixes #149 | Pjotr Prins |
2018-08-25 | segfpe handling | Pjotr Prins |
2018-06-29 | Merge branch 'master' of github.com:genetics-statistics/GEMMA | Pjotr Prins |
2018-02-28 | renamed import io.h to gemma_io.h | DannyArends |
2018-01-27 | Extra error info on strtok parsing failure - should help support | Pjotr Prins |
2017-12-12 | Updated copyright info | Pjotr Prins |
2017-12-08 | Legacy mode does not show logl_H1 column in output | Pjotr Prins |
2017-12-06 | Some cleanup on matrix checking | Pjotr Prins |
2017-11-30 | Fixed never-ending run when analyzing only a single SNP, ref••• https://groups.google.com/forum/#!topic/gemma-discussion/a-ommTiucC8
| Pjotr Prins |
2017-11-22 | Remove compiler warnings and add check is_nan | Pjotr Prins |
2017-11-15 | Nans: introducing checking on mem free | Pjotr Prins |
2017-11-11 | Fix compiler warnings | Pjotr Prins |
2017-10-26 | Get rid of compiler warning | Pjotr Prins |
2017-10-23 | Travis-ci:•••- Disabled gcc-6 since we develop with later tools anyway
- Turned the release test into a simple integration test
- Adding MacOSX on Travis-ci
Tests: Adding tests for Plink w. LOCO
Safety: Introduce strtok_safe to get rid of segfaults
| Pjotr Prins |
2017-10-18 | Tests still pass with safe_alloc (which sets the buffers to NaNs on allocation) | Pjotr Prins |
2017-10-13 | Replacing first dgemm - tests fail | Pjotr Prins |
2017-10-13 | OpenBlas: preparing for dgemm use | Pjotr Prins |
2017-10-13 | Fix header for not showing se | Pjotr Prins |
2017-10-13 | Disable se for lmm=2, see https://github.com/genetics-statistics/GEMMA/issues/81 | Pjotr Prins |
2017-10-13 | Fixed mean and iterations in Plink - now this works | Pjotr Prins |
2017-10-13 | Fix embarrassing bug that broke BIMBAM for larger datasets - found it when po... | Pjotr Prins |
2017-10-06 | LMM: small cleanup and default to NaN initialization | Pjotr Prins |
2017-10-06 | LMM: BIMBAM and PLINK share same LMM code - test pass | Pjotr Prins |
2017-10-06 | LMM: lifter genotype parsing for BIMBAM. All tests pass. | Pjotr Prins |
2017-10-06 | LMM: lifter line no | Pjotr Prins |
2017-10-06 | LMM: lifted out file access | Pjotr Prins |
2017-10-06 | Oops: fixed logic problem after removing Oxford data | Pjotr Prins |
2017-10-05 | Removed Oxford format as per https://github.com/genetics-statistics/GEMMA/iss... | Pjotr Prins |