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| -rw-r--r-- | INSTALL.md | 40 | ||||
| -rw-r--r-- | README.md | 2 |
2 files changed, 41 insertions, 1 deletions
diff --git a/INSTALL.md b/INSTALL.md new file mode 100644 index 0000000..dd6bb2a --- /dev/null +++ b/INSTALL.md @@ -0,0 +1,40 @@ +# INSTALL GEMMA: Genome-wide Efficient Mixed Model Association + +## Check version + +Simply run gemma once installed + + gemma + +and it should give you the version. + +## GEMMA dependencies + +GEMMA runs on Linux and MAC OSX and the runtime has the following +dependencies: + +* C++ tool chain +* GNU Science library (GSL) +* blas +* [Eigen library](http://eigen.tuxfamily.org/dox/) +* zlib + +## Install GEMMA + +### Bioconda + +Recent versions of GEMMA can be installed with +[BioConda](http://ddocent.com/bioconda/) without root permissions using the following +command + + conda install gemma + +### GNU Guix + +The GNU Guix package manager can install recent versions of GEMMA +using the following command + + guix package -i gemma + + +### Install from source @@ -50,7 +50,7 @@ MQS algorithm to estimate variance components. ## Quick start -1. Download and install the software. *Give more details here.* +1. Download and install the software. See [INSTALL.md](INSTALL.md). 2. Work through the demo. *Give more details here.* |