aboutsummaryrefslogtreecommitdiff
path: root/INSTALL.md
blob: dd6bb2a233a503a6a9ec3490db9c9d1f11caaa28 (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
# INSTALL GEMMA: Genome-wide Efficient Mixed Model Association

## Check version

Simply run gemma once installed

    gemma

and it should give you the version.

## GEMMA dependencies

GEMMA runs on Linux and MAC OSX and the runtime has the following
dependencies:

* C++ tool chain
* GNU Science library (GSL)
* blas
* [Eigen library](http://eigen.tuxfamily.org/dox/)
* zlib

## Install GEMMA

### Bioconda

Recent versions of GEMMA can be installed with
[BioConda](http://ddocent.com/bioconda/) without root permissions using the following
command

    conda install gemma

### GNU Guix

The GNU Guix package manager can install recent versions of GEMMA
using the following command

    guix package -i gemma


### Install from source