diff options
Diffstat (limited to 'src/lmm.cpp')
| -rw-r--r-- | src/lmm.cpp | 5 |
1 files changed, 2 insertions, 3 deletions
diff --git a/src/lmm.cpp b/src/lmm.cpp index 1ef3990..12e4edb 100644 --- a/src/lmm.cpp +++ b/src/lmm.cpp @@ -96,7 +96,7 @@ void LMM::CopyToParam(PARAM &cPar) { cPar.time_UtX = time_UtX; cPar.time_opt = time_opt; - cPar.ng_test = ng_test; + cPar.ng_test = ng_test; // number of markers tested return; } @@ -1723,7 +1723,6 @@ void LMM::Analyze(std::function< SnpNameValues(size_t) >& fetch_snp, gsl_matrix_set_zero(Xlarge); for (size_t i = 0; i < l; i++) { - ProgressBar("GWA compute ", i, l - 1); // for each snp batch item extract transformed genotype: gsl_vector_view UtXlarge_col = gsl_matrix_column(UtXlarge, i); gsl_vector_safe_memcpy(Utx, &UtXlarge_col.vector); @@ -1851,7 +1850,7 @@ void LMM::Analyze(std::function< SnpNameValues(size_t) >& fetch_snp, } batch_compute(c % msize); - ProgressBar("Computed ", num_snps - 1, num_snps - 1); + ProgressBar("Reading SNPS", num_snps - 1, num_snps - 1); // cout << "Counted SNPs " << c << " sumStat " << sumStat.size() << endl; cout << endl; checkpoint_nofile("end-lmm-analyze"); |