aboutsummaryrefslogtreecommitdiff
path: root/src/lapack.h
diff options
context:
space:
mode:
authorPeter Carbonetto2017-05-30 22:36:50 -0500
committerPeter Carbonetto2017-05-30 22:36:50 -0500
commit3f5d57d302188525f266ec041ebb745f6931876e (patch)
tree853d6aafccc41ba36f6d1e328c333cd6081fbd7f /src/lapack.h
parent5252c296a389f296e97d95e56f13b77351b32bec (diff)
downloadpangemma-3f5d57d302188525f266ec041ebb745f6931876e.tar.gz
Removing FORCE_FLOAT from some C++ source files.
Diffstat (limited to 'src/lapack.h')
-rw-r--r--src/lapack.h48
1 files changed, 32 insertions, 16 deletions
diff --git a/src/lapack.h b/src/lapack.h
index e5a1d37..5277b2f 100644
--- a/src/lapack.h
+++ b/src/lapack.h
@@ -1,6 +1,6 @@
/*
- Genome-wide Efficient Mixed Model Association (GEMMA)
- Copyright (C) 2011 Xiang Zhou
+ Genome-wide Efficient Mixed Model Association (GEMMA)
+ Copyright (C) 2011-2017 Xiang Zhou
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
@@ -13,7 +13,7 @@
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
- along with this program. If not, see <http://www.gnu.org/licenses/>.
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
#ifndef __LAPACK_H__
@@ -23,31 +23,47 @@
using namespace std;
-
void lapack_float_cholesky_decomp (gsl_matrix_float *A);
void lapack_cholesky_decomp (gsl_matrix *A);
-void lapack_float_cholesky_solve (gsl_matrix_float *A, const gsl_vector_float *b, gsl_vector_float *x);
+void lapack_float_cholesky_solve (gsl_matrix_float *A,
+ const gsl_vector_float *b,
+ gsl_vector_float *x);
void lapack_cholesky_solve (gsl_matrix *A, const gsl_vector *b, gsl_vector *x);
-void lapack_sgemm (char *TransA, char *TransB, float alpha, const gsl_matrix_float *A, const gsl_matrix_float *B, float beta, gsl_matrix_float *C);
-void lapack_dgemm (char *TransA, char *TransB, double alpha, const gsl_matrix *A, const gsl_matrix *B, double beta, gsl_matrix *C);
-void lapack_float_eigen_symmv (gsl_matrix_float *A, gsl_vector_float *eval, gsl_matrix_float *evec, const size_t flag_largematrix);
-void lapack_eigen_symmv (gsl_matrix *A, gsl_vector *eval, gsl_matrix *evec, const size_t flag_largematrix);
+void lapack_sgemm (char *TransA, char *TransB, float alpha,
+ const gsl_matrix_float *A, const gsl_matrix_float *B,
+ float beta, gsl_matrix_float *C);
+void lapack_dgemm (char *TransA, char *TransB, double alpha,
+ const gsl_matrix *A, const gsl_matrix *B,
+ double beta, gsl_matrix *C);
+void lapack_float_eigen_symmv (gsl_matrix_float *A, gsl_vector_float *eval,
+ gsl_matrix_float *evec,
+ const size_t flag_largematrix);
+void lapack_eigen_symmv (gsl_matrix *A, gsl_vector *eval, gsl_matrix *evec,
+ const size_t flag_largematrix);
-double EigenDecomp (gsl_matrix *G, gsl_matrix *U, gsl_vector *eval, const size_t flag_largematrix);
-double EigenDecomp (gsl_matrix_float *G, gsl_matrix_float *U, gsl_vector_float *eval, const size_t flag_largematrix);
+double EigenDecomp (gsl_matrix *G, gsl_matrix *U, gsl_vector *eval,
+ const size_t flag_largematrix);
+double EigenDecomp (gsl_matrix_float *G, gsl_matrix_float *U,
+ gsl_vector_float *eval, const size_t flag_largematrix);
double CholeskySolve(gsl_matrix *Omega, gsl_vector *Xty, gsl_vector *OiXty);
-double CholeskySolve(gsl_matrix_float *Omega, gsl_vector_float *Xty, gsl_vector_float *OiXty);
+double CholeskySolve(gsl_matrix_float *Omega, gsl_vector_float *Xty,
+ gsl_vector_float *OiXty);
void LUDecomp (gsl_matrix *LU, gsl_permutation *p, int *signum);
void LUDecomp (gsl_matrix_float *LU, gsl_permutation *p, int *signum);
-void LUInvert (const gsl_matrix *LU, const gsl_permutation *p, gsl_matrix *inverse);
-void LUInvert (const gsl_matrix_float *LU, const gsl_permutation *p, gsl_matrix_float *inverse);
+void LUInvert (const gsl_matrix *LU, const gsl_permutation *p,
+ gsl_matrix *inverse);
+void LUInvert (const gsl_matrix_float *LU, const gsl_permutation *p,
+ gsl_matrix_float *inverse);
double LULndet (gsl_matrix *LU);
double LULndet (gsl_matrix_float *LU);
-void LUSolve (const gsl_matrix *LU, const gsl_permutation *p, const gsl_vector *b, gsl_vector *x);
-void LUSolve (const gsl_matrix_float *LU, const gsl_permutation *p, const gsl_vector_float *b, gsl_vector_float *x);
+void LUSolve (const gsl_matrix *LU, const gsl_permutation *p,
+ const gsl_vector *b, gsl_vector *x);
+void LUSolve (const gsl_matrix_float *LU, const gsl_permutation *p,
+ const gsl_vector_float *b, gsl_vector_float *x);
bool lapack_ddot(vector<double> &x, vector<double> &y, double &v);
bool lapack_sdot(vector<float> &x, vector<float> &y, double &v);
+
#endif