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| author | Pjotr Prins | 2021-07-01 03:45:37 -0500 |
|---|---|---|
| committer | Pjotr Prins | 2021-07-01 03:45:37 -0500 |
| commit | 56afbdbb119844345ffc1b9c6ff73af35e054816 (patch) | |
| tree | 94a6b68c6e82aa81abad9260c4ea7f0cf0816324 /doc | |
| parent | cbbd4959455c8c6a70839e5806b0f3a22a7fda05 (diff) | |
| download | pangemma-56afbdbb119844345ffc1b9c6ff73af35e054816.tar.gz | |
manual: minor formatting
Diffstat (limited to 'doc')
| -rw-r--r-- | doc/manual.pdf | bin | 241449 -> 270399 bytes | |||
| -rw-r--r-- | doc/manual.tex | 5 |
2 files changed, 3 insertions, 2 deletions
diff --git a/doc/manual.pdf b/doc/manual.pdf Binary files differindex c602856..a057834 100644 --- a/doc/manual.pdf +++ b/doc/manual.pdf diff --git a/doc/manual.tex b/doc/manual.tex index 0a6210b..446b2f8 100644 --- a/doc/manual.tex +++ b/doc/manual.tex @@ -411,12 +411,13 @@ as 1 and major allele as 0. Missing genotypes are represented as ``NA'' values. One can use the following bash command (in one line) to generate -BIMBAM mean genotype file from IMPUTE genotype files +BIMBAM mean genotype file from IMPUTE genotype files \\ (\url{http://www.stats.ox.ac.uk/~marchini/software/gwas/file_format.html})\cite{Howie:2009}: % \begin{verbatim} cat [impute filename] | awk -v s=[number of samples/individuals] -'{ printf $2 "," $4 "," $5; for(i=1; i<=s; i++) printf "," $(i*3+3)*2+$(i*3+4); printf "\n" }' +'{ printf $2 "," $4 "," $5; for(i=1; i<=s; i++) \ + printf "," $(i*3+3)*2+$(i*3+4); printf "\n" }' > [bimbam filename] \end{verbatim} % |