Add test framework based on shunit2

2 files changed, 24 insertions, 0 deletions

diff --git a/run_tests.sh b/run_tests.sh
new file mode 100755
index 0000000..e8b7d49
--- /dev/null
+++ b/run_tests.sh
@@ -0,0 +1,7 @@
+#!/usr/bin/env bash
+
+# download shunit2 in order to run tests:
+# curl -L "https://dl.dropboxusercontent.com/u/7916095/shunit2-2.0.3.tgz" | tar zx --overwrite
+
+cd test
+./test_suite.sh | tee /dev/stderr | grep -q 'success rate: 100%'
diff --git a/test/test_suite.sh b/test/test_suite.sh
new file mode 100755
index 0000000..c6aa38e
--- /dev/null
+++ b/test/test_suite.sh
@@ -0,0 +1,17 @@
+#!/usr/bin/env bash
+
+gemma=../bin/gemma
+
+testCenteredRelatednessMatrix() {
+    $gemma -g ../example/mouse_hs1940.geno.txt.gz -p ../example/mouse_hs1940.pheno.txt \
+                 -a ../example/mouse_hs1940.anno.txt -gk -o mouse_hs1940
+    assertEquals "3763600" `wc -w < output/mouse_hs1940.cXX.txt`
+}
+
+shunit2=`which shunit2`
+if [ -x "$shunit2" ]; then
+    . $shunit2
+else
+    # try to run the locally installed shunit2
+    . ../shunit2-2.0.3/src/shell/shunit2
+fi