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2022-04-12gn: python-rpy2-next: Remove package....python-rpy2@3.4.5 has been upstreamed. * gn/packages/python.scm (python-rpy2-next): Delete variable. * gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Replace python-rpy2-next with python-rpy2. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Alexander
2022-04-12gn: r-ctl: Update to 1.0.0-7....* gn/packages/statistics.scm (r-ctl): Update to 1.0.0-7. [source]: Use cran-uri. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Alexander
2022-04-10gn: vg: Update to 1.39.0.Efraim Flashner
2022-04-08gn: Add smithwaterman-static....* gn/packages/static.scm (smithwaterman-static): New variable. Arun Isaac
2022-04-07qc: update to a0d8c80...change unlicense jgart
2022-04-07nb-upload: update to 3e8fe60jgart
2022-04-07binderlite: add nb-uploadjgart
2022-04-06gn: tissue: Substitute git path in tissue/git.scm....* gn/packages/gemini.scm (tissue)[arguments]: In the custom configure phase, substitute absolute path to git in tissue/git.scm, but not in tissue/web.scm. Arun Isaac
2022-04-06quality-control: add WIP sbcl-qc-uploads packagejgart
2022-04-06move sbcl-qc to quality-control modulejgart
2022-04-06gn: tissue: Update to 0.1.0-0.25104d4....* gn/packages/gemini.scm (tissue): Update to 0.1.0-0.25104d4. Arun Isaac
2022-04-06gn: skribilo-with-gemtext-reader: Update to 0.9.5-0.8d4f4c8....* gn/packages/gemini.scm (skribilo-with-gemtext-reader): Update to 0.9.5-0.8d4f4c8. Arun Isaac
2022-04-05remove python-dotenv-for-binderlite...upstreamed: https://issues.guix.gnu.org/54712 jgart
2022-04-04add python-dotenv-for-binderlitejgart
2022-04-04gn: packages: python: add python-supervisor...todo: fix tests: https://github.com/NixOS/nixpkgs/blob/nixos-21.11/pkgs/development/python-modules/supervisor/default.nix#L16 jgart
2022-04-04gn: binderlite: add python-jgart-giturlparsejgart
2022-04-04gn: gem5: Prepare for test suite.Efraim Flashner
2022-04-03gn: Some packages upstreamedEfraim Flashner
2022-04-01gn: wfmash-static: Set name to wfmash-static....* gn/packages/static.scm (wfmash-static)[name]: Set to wfmash-static. Arun Isaac
2022-04-01gn: Add wfmash-static....* gn/packages/static.scm: Import (gnu packages bioinformatics), (gnu packages compression), (gnu packages cpp), (gnu packages jemalloc), (gnu packages maths), (guix gexp) and (guix utils). (htslib-minimal, wfmash-static): New variables. Arun Isaac
2022-04-01gn: hello-static: Move to gn/packages/static.scm....* gn/packages/riscv.scm: Do not import (gnu packages base), (guix packages) and (guix build-system gnu). (hello-static): Move to gn/packages/static.scm. * gn/packages/static.scm: New file. Arun Isaac
2022-04-01gn: riscv-pk: Remove package....riscv-pk has been upstreamed. * gn/packages/virtualization.scm: Do not import (guix build-system gnu) and (gnu packages cross-base). (riscv-pk): Delete variable. Arun Isaac
2022-04-01gn: wfmash: Remove package....wfmash has been upstreamed. * gn/packages/riscv.scm (wfmash): Delete variable. Arun Isaac
2022-03-31don't break guix pullEfraim Flashner
2022-03-31gn: Update gfaffix to 0.1.3Efraim Flashner
2022-03-29gn: hello-static: Set name to hello-static....* gn/packages/riscv.scm (hello-static)[name]: Set to hello-static. Arun Isaac
2022-03-29gnu: riscv-pk: Do not strip symbols fromhost and tohost....* gn/packages/virtualization.scm (riscv-pk)[arguments]: Keep symbols fromhost and tohost while stripping. Arun Isaac
2022-03-29gnu: hello: Use static-package....* gn/packages/riscv.scm: Import (guix build-system gnu). (hello): Use static-package. Arun Isaac
2022-03-24gnu: tissue: Update to 0.1.0-0.b154339....* gn/packages/gemini.scm (tissue): Update to 0.1.0-0.b154339. [arguments]: Import target-guile-effective-version from (guix build guile-build-system). Wrap executable to set GUILE_LOAD_PATH and GUILE_LOAD_COMPILED_PATH. Arun Isaac
2022-03-24gn: skribilo-with-gemtext-reader: Update to 0.9.5-0.183eb12....* gn/packages/gemini.scm (skribilo-with-gemtext-reader): Update to 0.9.5-0.183eb12. Arun Isaac
2022-03-23lisp: remove upstreamed cl-ningle updates...MERGED https://issues.guix.gnu.org/54503 jgart
2022-03-23gn: gem5: install configs, wrap binaries.Efraim Flashner
2022-03-23gn: skribilo-with-gemtext-reader: Update to skribilo-0.9.5-0.fb51be9...Building tissue was failing because of this package. * gn/packages/gemini.scm : Use commit "fb51be990a4bb8fb76373b519edfcf11390dcca1". [package]: Use above commit. Update hash. BonfaceKilz
2022-03-23gn: Add hello-staticEfraim Flashner
2022-03-23gn: gem5: unbundle pybind11Efraim Flashner
2022-03-23gn: Add riscv-pk.Efraim Flashner
2022-03-21lisp: add sbcl-ningle...https://issues.guix.gnu.org/54503 jgart
2022-03-21gn: wfmash: update to 0.7.0-26.81b8292.Efraim Flashner
2022-03-20gn: Add gem5.Efraim Flashner
2022-03-20gn: upstream python-scikit-allelEfraim Flashner
2022-03-16gn: genenetwork3: Update to 0.1.0-2.16367da....* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-2.16367da. BonfaceKilz
2022-03-16gn: Add python-pixy.Efraim Flashner
2022-03-16gn: genenetwork2: Move pytest and pytest-mock to propagated-inputs...These packages are required in the propagated-inputs so that they can be run locally. * gn/packages/genenetwork.scm (genenetwork)[native-inputs]: Move pytest and pytest to... [propagated-inputs]: here. BonfaceKilz
2022-03-16gn: genenetwork2: Add pytest and pytest-mock...* gn/packages/genenetwork.scm (genenetwork2) [native-inputs]: Add pytest and pytest-mock BonfaceKilz
2022-03-14gn: Add wfmash....This patch adds a version of wfmash that builds and runs successfully on RISC-V. * gn/packages/riscv.scm: New file. Arun Isaac
2022-03-14gn: tissue: Update to 0.1.0-0.17d101b....* gn/packages/gemini.scm (tissue): Update to 0.1.0-0.17d101b. [arguments]: Substitute absolute path to git. [inputs]: Add git-minimal. Arun Isaac
2022-03-14gn: tissue: Update to 0.1.0-0.e62965d....* gn/packages/gemini.scm (skribilo-with-gemtext-reader): New variable. (tissue): Update to 0.1.0-0.e62965d. [arguments]: Add "GUILE_AUTO_COMPILE=0" to #:make-flags. [propagated-inputs]: Add skribilo-with-gemtext-reader. Arun Isaac
2022-03-10services: databases: Add virtuoso state directory configuration....* gn/services/databases.scm (<virtuoso-configuration>)[state-directory]: New field. * gn/services/databases.scm (virtuoso-shepherd-service): Use state-directory. Arun Isaac
2022-03-10services: databases: Add virtuoso SQL server IP and port setting....* gn/services/databases.scm (<virtuoso-configuration>)[server-ip, server-port]: New fields. * gn/services/databases.scm (virtuoso-shepherd-service): Use server-ip and server-port. Arun Isaac
2022-03-10services: databases: Add virtuoso HTTP server configuration....* gn/services/databases.scm (<virtuoso-configuration>)[http-server-ip]: New field. * gn/services/databases.scm (virtuoso-shepherd-service): Use http-server-ip. Arun Isaac