| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 42 hours | gn-correlation: Upgrade to commit d7b1fd6.HEADmaster | Alexander_Kabui | |
| * gn/packages/crate-io.scm (gn-rust-correlation): Update to d7b1fd6. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 3 days | genenetwork2: Upgrade to commit 4d0335b. | Frederick Muriuki Muriithi | |
| 6 days | genenetwork2: Replace python-pillow with python-pillow-9. | Alexander_Kabui | |
| * gn/packages/genenetwork.scm (genenetwork2) [propagated-inputs]: Use python-pilow-9. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 6 days | gn: Add python-pillow-9. | Alexander_Kabui | |
| * gn/packages/python.scm (python-pillow-9): New variable. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 6 days | genenetwork3: upgrade to commit d314a08. | Frederick Muriuki Muriithi | |
| 7 days | gn-auth: Upgrade to b516826. | Munyoki Kilyungi | |
| 8 days | genenetwork2: Remove python-sqlalchemy. | Munyoki Kilyungi | |
| * gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Delete python-sqlalchemy. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 9 days | python-flask-session: Override package with egregious name. | Frederick Muriuki Muriithi | |
| Redefine package, making use of an egregious name to force us to get rid of it once we pin a guix channel with an updated python-flask-session. | |||
| 9 days | genenetwork3: upgrade to commit 89b941b. | Frederick Muriuki Muriithi | |
| 9 days | python-flask-session: Provide stop-gap to fix build failures. | Frederick Muriuki Muriithi | |
| 9 days | python-authlib: upgrate to version 1.5.0. | Frederick Muriuki Muriithi | |
| 9 days | Replace %gnu-build-system-modules with %default-gnu-imported-modules | Frederick Muriuki Muriithi | |
| Replace the deprecated %gnu-build-system-modules with the newer %default-gnu-imported-modules in order to quiet the deprecation notice when building stuff from guix-bioinformatics. | |||
| 9 days | gn-libs: Add required, build-specific dependencies. | Frederick Muriuki Muriithi | |
| 10 days | python: python-flask-debugtoobar: Update to 0.16.0 | Munyoki Kilyungi | |
| * gn/packages/python.scm (python-flask-debugtoolbar): [source]: Use github URL instead of PyPi. [build-system]: use pyproject-build-system. [native-inputs]: Add python-pytest. [propagated-inputs]: Add python-flit-core and python-flask-sqlalchemy. | |||
| 10 days | Upgrade guix channel to c84ba4f. | Arun Isaac | |
| * .guix-channel: Upgrade guix channel to c84ba4f. * gn/packages/crates-io.scm: Import (gnu packages crates-check) for rust-criterion. * gn/packages/crates-io.scm, gn/packages/bioinformatics.scm: Import (gnu packages crates-compression) for rust-flate2. | |||
| 14 days | Genenetwork2: Upgrade to commit 96433ed. | Munyoki Kilyungi | |
| 14 days | Genenetwork3: Upgrade to c01aa26. | Munyoki Kilyungi | |
| 2025-02-19 | Genenetwork2: Upgrade to commit 2a3df8c. | Frederick Muriuki Muriithi | |
| 2025-02-19 | Genenetwork3: Upgrade to commit 99fd507. | Frederick Muriuki Muriithi | |
| 2025-02-19 | gn-uploader: Upgrade to commit 64c404e. | Frederick Muriuki Muriithi | |
| 2025-02-19 | gn-auth: upgrade to commit 073395f. | Frederick Muriuki Muriithi | |
| 2025-02-19 | gn-guile: Update gn-guile. | Munyoki Kilyungi | |
| * gn/packages/guile.scm: Import guile-lmdb and guile-lib. (gn-guile): Update to 169d26710c978484f8e9464a95be6eaa47fa704e. Also, make lmdb-publishdata-export script executable. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-02-19 | gn: genenetwork2: Add javascript-xterm, javascript-xterm-style. | Alexander_Kabui | |
| * gn/packages/genenetwork.scm (genenetwork2) [propagated-inputs]: Add javascript-xterm, javascript-xterm-style. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-02-19 | gn: javascript: Update javascript-xterm, javascript-xterm-style. | Alexander_Kabui | |
| * gn/packages/javascript.scm (javascript-xterm): Update to 5.3.0 * gn/packages/javascript.scm (javascript-xterm-style): Update to 5.3.0 Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-02-17 | gn: pggb: Use wfmash-0.14 instead of the latest wfmash. | Arun Isaac | |
| * gn/packages/bioinformatics.scm (pggb)[inputs]: Replace wfmash with wfmash-0.14. | |||
| 2025-02-17 | gn: Add wfmash-0.14. | Arun Isaac | |
| * gn/packages/bioinformatics.scm (wfmash-0.14): New variable. | |||
| 2025-02-11 | gn: pggb: Update to 0.7.2. | Arun Isaac | |
| * gn/packages/bioinformatics.scm (pggb): Update to 0.7.2. | |||
| 2025-02-11 | gn: pggb: Remove unused dependencies. | Arun Isaac | |
| These dependencies are referred to in the documentation and put into the Docker image, but are not actually used by pggb. * gn/packages/bioinformatics.scm (pggb)[inputs]: Remove fastix, mummer, pafplot and vcflib. | |||
| 2025-02-11 | gn: odgi: Disable tests. | Arun Isaac | |
| * gn/packages/bioinformatics.scm (odgi): Disable tests. | |||
| 2025-02-10 | gn-guile: Make dependencies available in profile after build | Frederick Muriuki Muriithi | |
| 2025-02-10 | genenetwork2: Upgrade to commit 4f9a46e. | Frederick Muriuki Muriithi | |
| 2025-02-04 | gn-uploader: Upgrade to commit d8b58c3. | Frederick Muriuki Muriithi | |
| 2025-02-03 | gn-auth: upgrade to commit 8e64f7f. | Frederick Muriuki Muriithi | |
| 2025-02-03 | gn-auth: upgrade to commit eec8128. | Frederick Muriuki Muriithi | |
| 2025-01-29 | gn-uploader: upgrade to commit 8ab53c9. | Frederick Muriuki Muriithi | |
| 2025-01-29 | gn-uploader: Upgrade to commit 848bd53. | Frederick Muriuki Muriithi | |
| 2025-01-29 | gn-uploader: Add javascript-datatables as a dependency. | Frederick Muriuki Muriithi | |
| 2025-01-28 | Change "dirs-allowed" setting to a list | Frederick Muriuki Muriithi | |
| Virtuoso's DirsAllowed setting expects a comma-delimited list of directories. See https://docs.openlinksw.com/virtuoso/ch-server/#ini_parameters Initially, we only allowed one path. This commit fixes that, allowing a list of paths to be passed in. | |||
| 2025-01-28 | gn-uploader: Bump up commit to b7d4263. | Frederick Muriuki Muriithi | |
| 2025-01-28 | gn-uploader: Upgrade to version 0.1.0 and commit cb57ff0e. | Frederick Muriuki Muriithi | |
| We are gaining some stability at this point, so we raise the minor version. Also mark the commit for the demo. | |||
| 2025-01-26 | Genenetwork3: upgrade to commit 0d902ec. | Frederick Muriuki Muriithi | |
| 2025-01-25 | Genenetwork2: Upgrade to commit 314c6d5. | Frederick Muriuki Muriithi | |
| 2025-01-25 | gnu: r-rrbgen: Fix name typo. | Arun Isaac | |
| * gn/packages/bioinformatics.scm (r-rrbgen)[name]: Fix typo. | |||
| 2025-01-22 | genenetwork2: Upgrade to commit 0db8dca. | Frederick Muriuki Muriithi | |
| Fixes bug with the registration page. | |||
| 2025-01-21 | gn-libs: upgrade to commit 72a95f8. | Frederick Muriuki Muriithi | |
| 2025-01-20 | gn-auth: Upgrade to e345a04. | Frederick Muriuki Muriithi | |
| 2025-01-20 | Genenetwork3: Upgrade to commit 5d2aebb. | Frederick Muriuki Muriithi | |
| 2025-01-20 | Genenetwork2: Upgrade to commit 6d4d48e. | Frederick Muriuki Muriithi | |
| 2025-01-10 | genenetwork2: upgrade to commit 798d3c6. | Frederick Muriuki Muriithi | |
| 2025-01-10 | gn-auth: upgrade to commit 877a7a3. | Frederick Muriuki Muriithi | |
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index : guix-bioinformatics | |
| Bioinformatics packages for GNU Guix |
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