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2022-04-05remove python-dotenv-for-binderlitejgart
upstreamed: https://issues.guix.gnu.org/54712
2022-04-04add python-dotenv-for-binderlitejgart
2022-04-04gn: packages: python: add python-supervisorjgart
todo: fix tests: https://github.com/NixOS/nixpkgs/blob/nixos-21.11/pkgs/development/python-modules/supervisor/default.nix#L16
2022-04-04gn: binderlite: add python-jgart-giturlparsejgart
2022-04-04gn: gem5: Prepare for test suite.Efraim Flashner
2022-04-03gn: Some packages upstreamedEfraim Flashner
2022-04-01gn: wfmash-static: Set name to wfmash-static.Arun Isaac
* gn/packages/static.scm (wfmash-static)[name]: Set to wfmash-static.
2022-04-01gn: Add wfmash-static.Arun Isaac
* gn/packages/static.scm: Import (gnu packages bioinformatics), (gnu packages compression), (gnu packages cpp), (gnu packages jemalloc), (gnu packages maths), (guix gexp) and (guix utils). (htslib-minimal, wfmash-static): New variables.
2022-04-01gn: hello-static: Move to gn/packages/static.scm.Arun Isaac
* gn/packages/riscv.scm: Do not import (gnu packages base), (guix packages) and (guix build-system gnu). (hello-static): Move to gn/packages/static.scm. * gn/packages/static.scm: New file.
2022-04-01gn: riscv-pk: Remove package.Arun Isaac
riscv-pk has been upstreamed. * gn/packages/virtualization.scm: Do not import (guix build-system gnu) and (gnu packages cross-base). (riscv-pk): Delete variable.
2022-04-01gn: wfmash: Remove package.Arun Isaac
wfmash has been upstreamed. * gn/packages/riscv.scm (wfmash): Delete variable.
2022-03-31don't break guix pullEfraim Flashner
2022-03-31gn: Update gfaffix to 0.1.3Efraim Flashner
2022-03-29gn: hello-static: Set name to hello-static.Arun Isaac
* gn/packages/riscv.scm (hello-static)[name]: Set to hello-static.
2022-03-29gnu: riscv-pk: Do not strip symbols fromhost and tohost.Arun Isaac
* gn/packages/virtualization.scm (riscv-pk)[arguments]: Keep symbols fromhost and tohost while stripping.
2022-03-29gnu: hello: Use static-package.Arun Isaac
* gn/packages/riscv.scm: Import (guix build-system gnu). (hello): Use static-package.
2022-03-24gnu: tissue: Update to 0.1.0-0.b154339.Arun Isaac
* gn/packages/gemini.scm (tissue): Update to 0.1.0-0.b154339. [arguments]: Import target-guile-effective-version from (guix build guile-build-system). Wrap executable to set GUILE_LOAD_PATH and GUILE_LOAD_COMPILED_PATH.
2022-03-24gn: skribilo-with-gemtext-reader: Update to 0.9.5-0.183eb12.Arun Isaac
* gn/packages/gemini.scm (skribilo-with-gemtext-reader): Update to 0.9.5-0.183eb12.
2022-03-23lisp: remove upstreamed cl-ningle updatesjgart
MERGED https://issues.guix.gnu.org/54503
2022-03-23gn: gem5: install configs, wrap binaries.Efraim Flashner
2022-03-23gn: skribilo-with-gemtext-reader: Update to skribilo-0.9.5-0.fb51be9BonfaceKilz
Building tissue was failing because of this package. * gn/packages/gemini.scm : Use commit "fb51be990a4bb8fb76373b519edfcf11390dcca1". [package]: Use above commit. Update hash.
2022-03-23gn: Add hello-staticEfraim Flashner
2022-03-23gn: gem5: unbundle pybind11Efraim Flashner
2022-03-23gn: Add riscv-pk.Efraim Flashner
2022-03-21lisp: add sbcl-ninglejgart
https://issues.guix.gnu.org/54503
2022-03-21gn: wfmash: update to 0.7.0-26.81b8292.Efraim Flashner
2022-03-20gn: Add gem5.Efraim Flashner
2022-03-20gn: upstream python-scikit-allelEfraim Flashner
2022-03-16gn: genenetwork3: Update to 0.1.0-2.16367da.BonfaceKilz
* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-2.16367da.
2022-03-16gn: Add python-pixy.Efraim Flashner
2022-03-16gn: genenetwork2: Move pytest and pytest-mock to propagated-inputsBonfaceKilz
These packages are required in the propagated-inputs so that they can be run locally. * gn/packages/genenetwork.scm (genenetwork)[native-inputs]: Move pytest and pytest to... [propagated-inputs]: here.
2022-03-16gn: genenetwork2: Add pytest and pytest-mockBonfaceKilz
* gn/packages/genenetwork.scm (genenetwork2) [native-inputs]: Add pytest and pytest-mock
2022-03-14gn: Add wfmash.Arun Isaac
This patch adds a version of wfmash that builds and runs successfully on RISC-V. * gn/packages/riscv.scm: New file.
2022-03-14gn: tissue: Update to 0.1.0-0.17d101b.Arun Isaac
* gn/packages/gemini.scm (tissue): Update to 0.1.0-0.17d101b. [arguments]: Substitute absolute path to git. [inputs]: Add git-minimal.
2022-03-14gn: tissue: Update to 0.1.0-0.e62965d.Arun Isaac
* gn/packages/gemini.scm (skribilo-with-gemtext-reader): New variable. (tissue): Update to 0.1.0-0.e62965d. [arguments]: Add "GUILE_AUTO_COMPILE=0" to #:make-flags. [propagated-inputs]: Add skribilo-with-gemtext-reader.
2022-03-10services: databases: Add virtuoso state directory configuration.Arun Isaac
* gn/services/databases.scm (<virtuoso-configuration>)[state-directory]: New field. * gn/services/databases.scm (virtuoso-shepherd-service): Use state-directory.
2022-03-10services: databases: Add virtuoso SQL server IP and port setting.Arun Isaac
* gn/services/databases.scm (<virtuoso-configuration>)[server-ip, server-port]: New fields. * gn/services/databases.scm (virtuoso-shepherd-service): Use server-ip and server-port.
2022-03-10services: databases: Add virtuoso HTTP server configuration.Arun Isaac
* gn/services/databases.scm (<virtuoso-configuration>)[http-server-ip]: New field. * gn/services/databases.scm (virtuoso-shepherd-service): Use http-server-ip.
2022-03-10services: databases: Prefer (guix records) to define-configuration.Arun Isaac
define-configuration does too much magic. * gn/services/databases.scm (<virtuoso-configuration>): Redefine using (guix records). Export virtuoso-configuration?. (virtuoso-shepherd-service): Represent a disabled port with #f.
2022-03-07python-pytest-pudb: enable testsjgart
add more to description field
2022-03-03gn: Add pytest-pudbBonfaceKilz
* gn/packages/python.scm: New package.
2022-03-03gn: genenetwork3: Add python-pytest-mockBonfaceKilz
* gn/packages/genenetwork.scm (genenetwork3)[native-inputs]: Add python-pytest-mock.
2022-03-01cl-qc: update home-page and descriptionjgart
2022-03-01cl-qc: update to 89a2fjgart
2022-03-01cl-qc: update to eaa5djgart
2022-03-01packages: lisp: add cl-qcjgart
2022-02-27gn: Add willowmapEfraim Flashner
2022-02-18gn: genenetwork2: Update to 3.11-2.17652b1.Arun Isaac
* gn/packages/genenetwork.scm (genenetwork2): Update to 3.11-2.17652b1. [arguments]: Restore the default install phase.
2022-02-18gn: genenetwork3: List propagated inputs in plain list.Arun Isaac
Guix now prefers inputs as a plain list instead of an association list. Modernize. * gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Use plain list instead of association list.
2022-02-18gn: genenetwork3: Remove implicit inputs.Arun Isaac
coreutils and diffutils are implicit inputs of the python-build-system. They don't have to be included explicitly. * gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Remove coreutils and diffutils.
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