| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2023-10-27 | Update dependencies: genenetwork3 and gn-auth | Frederick Muriuki Muriithi | |
| * genenetwork3: Remove `yoyo-migrations` as a dependency * gn-auth: Use the upstream `yoyo-migrations` * Remove temporary local definition for yoyo-migrations. | |||
| 2023-10-26 | gn: htmx: Replace minify with trivial build system. | Munyoki Kilyungi | |
| Esbuild system has no support for ES5 and will lead to a build failure with the following output: `dist/htmx.js:1979:20: error: Transforming let to the configured target environment ("es5") is not supported yet` Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-10-19 | Remove python-arvados-python-client. | Arun Isaac | |
| The package is broken, some of its inputs have been removed from upstream Guix, and we no longer need this package. Restore it later if necessary. * gn/packages/python.scm (python-arvados-python-client): Delete variable. | |||
| 2023-10-19 | Remove bh20-seq-resource. | Arun Isaac | |
| The package is broken, some of its inputs have been removed from upstream Guix, and we no longer need this package. * gn/packages/bioinformatics.scm (bh20-seq-resource): Delete variable. * gn/services/bh20-seq-resource-container.scm: Delete file. | |||
| 2023-10-06 | genenetwork3: Add python-pyld to propagated-inputs. | Munyoki Kilyungi | |
| * gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add python-ld. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-10-04 | gn: javascript: Replace htmx.min.js with htmx.js. | Munyoki Kilyungi | |
| * gn/packages/javascript.scm (javascript-htmx) [arguments]: Replace "dist/htmx.min.js" with "dist/htmx.js" since we already are using the minify-build-system. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-09-27 | gn-auth: Fix missing import | Frederick Muriuki Muriithi | |
| 2023-09-27 | gn-auth: List packages to install | Frederick Muriuki Muriithi | |
| List all packages to install to hopefully fix failure in `sanity-check` phase. | |||
| 2023-09-27 | gn-auth: Use newer setup.py | Frederick Muriuki Muriithi | |
| Use updated setup.py to try and fix issues with the `sanity-check` phase. | |||
| 2023-09-27 | gn-auth: Use upstream python-mypy | Frederick Muriuki Muriithi | |
| 2023-09-27 | gn-auth: Update commit and hash | Frederick Muriuki Muriithi | |
| * Update the commit hash and the hash of the files after updating the guix-bioinformatics channel configurations for the gn-auth channel. | |||
| 2023-09-27 | gn-auth: Update commit and hash. | Frederick Muriuki Muriithi | |
| 2023-09-26 | pggb: Add missing inputs | Efraim Flashner | |
| 2023-09-26 | pggb: wrap with more packages | Efraim Flashner | |
| 2023-09-26 | gsl: Provide glibc-hwcaps version. | Efraim Flashner | |
| 2023-09-26 | vg: Update package definition | Efraim Flashner | |
| 2023-09-26 | seqwish: Provide glibc-hwcaps version | Efraim Flashner | |
| 2023-09-26 | seqwish: Build and link against shared library. | Efraim Flashner | |
| 2023-09-25 | seqwish: Make package tunable. | Efraim Flashner | |
| 2023-09-25 | vg: Link with some shared libraries. | Efraim Flashner | |
| 2023-09-25 | Delete python-mypy-0.981. | Munyoki Kilyungi | |
| * gn/packages/python.scm (python-mypy-0.981): Delete it. * gn/packages/genenetwork.scm (genenetwork3)[native-inputs]: Replace python-mypy-0.981 with upstream's python-mypy. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2023-09-24 | pggb: Fix typo. | Efraim Flashner | |
| 2023-09-24 | pggb: Provide version with glibc-hwcaps. | Efraim Flashner | |
| 2023-09-24 | Provide copy of sdsl-lite with glibc-hwcaps | Efraim Flashner | |
| 2023-09-24 | smoothxg: Link with odgi | Efraim Flashner | |
| 2023-09-24 | smoothxg: Link with sdsl-lite | Efraim Flashner | |
| 2023-09-24 | seqwish: Link with sdsl-lib | Efraim Flashner | |
| 2023-09-24 | pggb: Remove python-pycairo | Efraim Flashner | |
| 2023-09-24 | rtg-tools: Use a smaller java implementation | Efraim Flashner | |
| 2023-09-24 | pggb: Add htslib for tabix dependency. | Efraim Flashner | |
| 2023-09-22 | Add pggb. | Efraim Flashner | |
| 2023-09-22 | vg: Prepare for using a shared library. | Efraim Flashner | |
| 2023-09-22 | vg: Update to 1.50.0. | Efraim Flashner | |
| 2023-09-21 | rtg: Update package definition. | Efraim Flashner | |
| 2023-09-21 | mummer: Update to 4.0.0rc1. | Efraim Flashner | |
| 2023-09-21 | odgi: Add variant with glibc-hwcaps. | Efraim Flashner | |
| 2023-09-21 | wfmash: Fix typos. | Efraim Flashner | |
| 2023-09-21 | odgi: Update to 0.8.3. | Efraim Flashner | |
| 2023-09-21 | Add smoothxg | Efraim Flashner | |
| 2023-09-20 | seqwish: Update to 0.7.9. | Efraim Flashner | |
| 2023-09-20 | gn: genenetwork2: Add htmx. | Munyoki Kilyungi | |
| * gn/packages/genenetwork.scm (genenetwork2) [propagated-inputs]: Add htmx. | |||
| 2023-09-20 | gn: javascript: Add htmx. | Munyoki Kilyungi | |
| * gn/packages/javascript.scm (javascript-htmx): Add htmx. | |||
| 2023-09-20 | remove crates existing upstream | Efraim Flashner | |
| 2023-09-20 | Add wfmash with glibc-hwcap libraries. | Efraim Flashner | |
| 2023-09-19 | Add pafplot | Efraim Flashner | |
| 2023-09-19 | Add fastix | Efraim Flashner | |
| 2023-09-19 | Add vcfbub | Efraim Flashner | |
| 2023-09-19 | gfaffix: Update to 0.1.5. | Efraim Flashner | |
| 2023-09-19 | Update gem5 | Efraim Flashner | |
| 2023-09-19 | Update pluto notebook service and julia packages | Efraim Flashner | |
 |
index : guix-bioinformatics | |
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