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| author | Efraim Flashner | 2023-09-24 12:55:44 +0300 |
|---|---|---|
| committer | Efraim Flashner | 2023-09-24 12:55:44 +0300 |
| commit | d73c21e18365433b78ae5f92d80919ed8f6caa04 (patch) | |
| tree | 0838c455e28999941e1cfa3926f501989d2c5cd4 /gn/packages | |
| parent | 08c989ee9a328ce5a26cc34a95d71a5c92cfa09e (diff) | |
| download | guix-bioinformatics-d73c21e18365433b78ae5f92d80919ed8f6caa04.tar.gz | |
seqwish: Link with sdsl-lib
Diffstat (limited to 'gn/packages')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 16 |
1 files changed, 16 insertions, 0 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index c4463a2..a043358 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -1637,6 +1637,19 @@ runApp(launch.browser=0, port=4208)~%\n" (else '()))) #:phases (modify-phases %standard-phases + (add-after 'unpack 'link-with-some-shared-libraries + (lambda* (#:key inputs #:allow-other-keys) + (substitute* '("CMakeLists.txt" + "deps/mmmulti/CMakeLists.txt") + (("\".*libsdsl\\.a\"") "\"-lsdsl\"") + (("\".*libdivsufsort\\.a\"") "\"-ldivsufsort\"") + (("\".*libdivsufsort64\\.a\"") "\"-ldivsufsort64\"") + (("\\$\\{sdsl-lite_INCLUDE\\}") + (string-append (assoc-ref inputs "sdsl-lite") + "/include/sdsl")) + (("\\$\\{sdsl-lite-divsufsort_INCLUDE\\}") + (string-append (assoc-ref inputs "libdivsufsort") + "/include"))))) (replace 'check (lambda* (#:key tests? #:allow-other-keys) ;; Add seqwish to the PATH for the tests. @@ -1646,6 +1659,9 @@ runApp(launch.browser=0, port=4208)~%\n" (invoke "make")))))))) (inputs (list jemalloc + libdivsufsort + openmpi + sdsl-lite zlib)) (native-inputs (list perl)) |