| Age | Commit message (Expand) | Author |
|---|---|---|
| 2024-12-03 | gnu: vg: Update to 1.61.0....* gn/packages/bioinformatics.scm (vg): Update to 1.61.0. [arguments]: Add #:make-flags. Create obj and lib directories, and prevent them from being deleted. Install libhandlegraph.so. | Arun Isaac |
| 2024-12-03 | gn: vg: Build man pages unconditionally....* gn/packages/bioinformatics.scm (vg)[arguments]: Build man pages unconditionally in the build-manpages phase. | Arun Isaac |
| 2024-12-03 | gn: vg: Use G-expressions....* gn/packages/bioinformatics.scm (vg): Use G-expressions. | Arun Isaac |
| 2024-12-03 | gn: vg: Remove commented-out code....* gn/packages/bioinformatics.scm (vg)[arguments]: Remove commented-out code. | Arun Isaac |
| 2024-11-22 | gn-uploader: Add gn-libs as a dependency. | Frederick Muriuki Muriithi |
| 2024-11-22 | gn-libs: Upgrade to 4d9a298. | Frederick Muriuki Muriithi |
| 2024-11-22 | gn-auth: Upgrade to 346217b. | Frederick Muriuki Muriithi |
| 2024-11-22 | gn-auth: Add gn-libs as a new dependency. | Frederick Muriuki Muriithi |
| 2024-11-22 | gn-libs: Upgrade to 0.0.0-1.70f456f | Frederick Muriuki Muriithi |
| 2024-11-21 | gn-libs: New dependencies...Add `python-authlib` and `python-pymonad` as new dependencies. | Frederick Muriuki Muriithi |
| 2024-11-21 | gn-libs (gn packages genenetwork): New package....Add a new package named "gn-libs". | Frederick Muriuki Muriithi |
| 2024-11-18 | gn-guile: Upgrade to 7af301c. | Frederick Muriuki Muriithi |
| 2024-11-14 | guile: guile3-dbi: Use %gnu-build-system-modules....*gn/packages/guile.scm (guile3-dbi)[package]{arguments} <configure-flags>: Replace %default-gnu-imported-modules% with %gnu-build-system-modules. | Munyoki Kilyungi |
| 2024-11-12 | GeneNetwork2: Upgrade to 32140f6 | Frederick Muriuki Muriithi |
| 2024-11-12 | GeneNetwork3: Upgrade to 5ea318e | Frederick Muriuki Muriithi |
| 2024-11-12 | gn: genenetwork3: Add r-qtl2....* gn/packages/genenetwork.scm: (genenetwork3) [propagated-inputs]: Add r-qtl2. Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Alexander_Kabui |
| 2024-11-12 | Add gn-guile....* gn/packages/guile.scm (gn-guile): New package. | Munyoki Kilyungi |
| 2024-11-08 | Upgrade gn-auth to 4c21d0e. | Frederick Muriuki Muriithi |
| 2024-11-04 | Upgrade genenetwork2 to 578a8eb. | Frederick Muriuki Muriithi |
| 2024-11-04 | Import missing module. | Frederick Muriuki Muriithi |
| 2024-11-04 | GN2, GN3, gn-auth, gn-uploader: Add nss-certs for python-requests...All the flask applications mentioned above make use of python-requests library which needs the CA certificate bundle present within the environment that each application runs in. The nss-certs package installs the appropriate CA certificate bundles. | Frederick Muriuki Muriithi |
| 2024-10-31 | GeneNetwork2: Update commit and hash. | Frederick Muriuki Muriithi |
| 2024-10-25 | Upgrade guix channel to 2394a7f....* .guix-channel: Upgrade guix channel to 2394a7f. * gn/packages/bioinformatics.scm (pplacer)[inputs]: Replace gsl-static with (gsl "static"). * gn/packages/ocaml.scm (ocaml4.07-gsl-1)[inputs]: Replace gsl-static with (gsl "static"). * gn/packages/static.scm (wfmash-static)[inputs]: Replace gsl-static with (gsl "static"). | Arun Isaac |
| 2024-10-25 | gn: pplacer: Use G-expressions....* gn/packages/bioinformatics.scm (pplacer): Use G-expressions. | Arun Isaac |
| 2024-10-23 | gn: ocaml4.07-gsl-1: Use G-expressions....* gn/packages/ocaml.scm (ocaml4.07-gsl-1): Use G-expressions. | Arun Isaac |
| 2024-10-23 | gn: graphaligner: Update to 1.0.19....* gn/packages/bioinformatics.scm (graphaligner): Update to 1.0.19. [native-inputs]: Add (jemalloc "bin"). | Arun Isaac |
| 2024-10-23 | gn: graphaligner: Use G-expressions....* gn/packages/bioinformatics.scm (graphaligner): Use G-expressions. | Arun Isaac |
| 2024-10-22 | gn: smoothxg: Update to 0.8.0....* gn/packages/bioinformatics.scm (smoothxg): Update to 0.8.0. [arguments]: Remove architecture-specific -march=armv8-a+simd flag. | Arun Isaac |
| 2024-10-22 | gn: odgi: Update to 0.9.0....* gn/packages/bioinformatics.scm (odgi): Update to 0.9.0. | Arun Isaac |
| 2024-10-22 | gn: seqwish: Update to 0.7.11....* gn/packages/bioinformatics.scm (seqwish): Update to 0.7.11. | Arun Isaac |
| 2024-10-15 | GeneNetwork3: Update commit and hash. | Frederick Muriuki Muriithi |
| 2024-10-03 | gn-auth: Update commit and hash. | Frederick Muriuki Muriithi |
| 2024-09-27 | GeneNetwork3: Update commit and hash. | Frederick Muriuki Muriithi |
| 2024-09-27 | GeneNetwork3: Update commit and hash...Pull in fixes for WGCNA and CTL analyses. | Frederick Muriuki Muriithi |
| 2024-09-27 | GeneNetwork3: Update commit and hash...Pull in Pair-Scan output paths fixes | Frederick Muriuki Muriithi |
| 2024-09-27 | GeneNetwork3: Update commit and hash. | Frederick Muriuki Muriithi |
| 2024-09-27 | GeneNetwork3: Update commit and hash...Include R scripts in installed files. | Frederick Muriuki Muriithi |
| 2024-09-27 | GeneNetwork3: Update commit and hash...Pull in changes fixing paths for rqtl_wrapper.R script. | Frederick Muriuki Muriithi |
| 2024-09-27 | GeneNetwork3: Update commit and hash. | Frederick Muriuki Muriithi |
| 2024-09-25 | gn-auth: (python-blinker) New dependency | Frederick Muriuki Muriithi |
| 2024-09-25 | GeneNetwork2: Update commit and hash. | Frederick Muriuki Muriithi |
| 2024-09-12 | GeneNetwork3: Update commit and hash...* Add missing python package. | Frederick Muriuki Muriithi |
| 2024-09-12 | GeneNetwork3: Update commit and hash | Frederick Muriuki Muriithi |
| 2024-09-11 | GeneNetwork2: Update commit and hash...Update to latest commit with @pjotr's changes. | Frederick Muriuki Muriithi |
| 2024-09-11 | GeneNetwork2: Update commit and hash...Push fix below: https://github.com/genenetwork/genenetwork2/commit/8618fdc8f4c05153f48e1afdbf9d2c337ba79929 | Frederick Muriuki Muriithi |
| 2024-09-11 | GeneNetwork2: Update commit and hash...This pushes fix for the bug caused by using relative paths for font files. | Frederick Muriuki Muriithi |
| 2024-09-11 | GeneNetwork2: Update commit and hash | Frederick Muriuki Muriithi |
| 2024-09-11 | GeneNetwork2: Update commit and hash...This update pushes some logging of a font file. The purpose is to debug relative paths, and prove/disprove a hypothesis. | Frederick Muriuki Muriithi |
| 2024-09-10 | Revert "gn: gemma-wrapper: updated to 0.99.7"...This reverts commit 7eaa7028ffe3e8b0d5dfe242da87dd76930f637e. This does not include all the dependencies needed to run GEMMA. These were included with commit ab2ae88f2698cde22cae05c432f0f1ae0db7b070 later, but that also had to be reverted due to another issue altogether. | Frederick Muriuki Muriithi |
| 2024-09-10 | Revert "(gn packages gemma-wrapper): Add new dependencies."...This reverts commit ab2ae88f2698cde22cae05c432f0f1ae0db7b070. At this point, running GEMMA will fail because it attempts to extract files into the /tmp directory, which leads to permission issues when there is an attempt to change the permission bits of /tmp. | Frederick Muriuki Muriithi |
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