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AgeCommit message (Collapse)Author
2023-09-25seqwish: Make package tunable.Efraim Flashner
2023-09-25vg: Link with some shared libraries.Efraim Flashner
2023-09-25Delete python-mypy-0.981.Munyoki Kilyungi
* gn/packages/python.scm (python-mypy-0.981): Delete it. * gn/packages/genenetwork.scm (genenetwork3)[native-inputs]: Replace python-mypy-0.981 with upstream's python-mypy. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-09-24pggb: Fix typo.Efraim Flashner
2023-09-24pggb: Provide version with glibc-hwcaps.Efraim Flashner
2023-09-24Provide copy of sdsl-lite with glibc-hwcapsEfraim Flashner
2023-09-24smoothxg: Link with odgiEfraim Flashner
2023-09-24smoothxg: Link with sdsl-liteEfraim Flashner
2023-09-24seqwish: Link with sdsl-libEfraim Flashner
2023-09-24pggb: Remove python-pycairoEfraim Flashner
2023-09-24rtg-tools: Use a smaller java implementationEfraim Flashner
2023-09-24pggb: Add htslib for tabix dependency.Efraim Flashner
2023-09-22Add pggb.Efraim Flashner
2023-09-22vg: Prepare for using a shared library.Efraim Flashner
2023-09-22vg: Update to 1.50.0.Efraim Flashner
2023-09-21rtg: Update package definition.Efraim Flashner
2023-09-21mummer: Update to 4.0.0rc1.Efraim Flashner
2023-09-21odgi: Add variant with glibc-hwcaps.Efraim Flashner
2023-09-21wfmash: Fix typos.Efraim Flashner
2023-09-21odgi: Update to 0.8.3.Efraim Flashner
2023-09-21Add smoothxgEfraim Flashner
2023-09-20seqwish: Update to 0.7.9.Efraim Flashner
2023-09-20gn: genenetwork2: Add htmx.Munyoki Kilyungi
* gn/packages/genenetwork.scm (genenetwork2) [propagated-inputs]: Add htmx.
2023-09-20gn: javascript: Add htmx.Munyoki Kilyungi
* gn/packages/javascript.scm (javascript-htmx): Add htmx.
2023-09-20remove crates existing upstreamEfraim Flashner
2023-09-20Add wfmash with glibc-hwcap libraries.Efraim Flashner
2023-09-19Add pafplotEfraim Flashner
2023-09-19Add fastixEfraim Flashner
2023-09-19Add vcfbubEfraim Flashner
2023-09-19gfaffix: Update to 0.1.5.Efraim Flashner
2023-09-19Update gem5Efraim Flashner
2023-09-19Update pluto notebook service and julia packagesEfraim Flashner
2023-09-19remove unneeded module importEfraim Flashner
2023-09-19update julia-visualsEfraim Flashner
2023-09-19Remove `rust-clap-4`Frederick Muriuki Muriithi
There is a `rust-clap-4` package upstream.
2023-09-06gn: gn-auth: Update yoyo and mypyFrederick Muriuki Muriithi
Update yoyo and mypy to allow the use of Python-3.10
2023-09-05gn: genenetwork: Update mypy and yoyoMunyoki Kilyungi
* gn/packages/genenetwork.scm: Import (guix packages). (genenetwork3): Use yoyo-migrations v8.2.0 and python-mypy v0.981. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-09-05gn: python: Add python-mypy-0.981Munyoki Kilyungi
* gn/packages/python.scm (python-mypy-0.981): New package. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-09-05gn: python: Add yoyo-migrations-8.2.0Munyoki Kilyungi
* gn/packages/python.scm: Import (gnu packages databases) and (guix hg-download). (yoyo-migrations-8.2.0): New package. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-09-05Adjust how native/propagated inputs are defined for GN3Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-09-04Revert "Pin python to python@3.8.5"Munyoki Kilyungi
This reverts commit aaa6e53e7b623105d05e67e95186aba5b4671010.
2023-09-04Pin python to python@3.8.5Munyoki Kilyungi
* gn/packages/genenetwork.scm: (genenetwork3, genenetwork2): Using python@3.8.5 Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-31Move gn-auth to (gn packages genenetwork).Arun Isaac
2023-08-30Replace `(...) with (list ...): Fixes "undefined gexp" failure.Frederick Muriuki Muriithi
Replace the backquoted expression in the (arguments ...) section of the package definition to fix the error where the build could not find the variable gexp
2023-08-30Add missing `(guix gexp) module. Update package commit.Frederick Muriuki Muriithi
2023-08-25gn-auth: New packageFrederick Muriuki Muriithi
2023-07-06Remove tissue.Arun Isaac
tissue is now in upstream Guix. * gn/packages/gemini.scm: Delete file.
2023-07-05gn: genenetwork3: Update to 0.1.0-3.f52247c.Arun Isaac
* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-3.f52247c.
2023-07-05Run genenetwork3 tests using pytest.Arun Isaac
* gn/packages/genenetwork.scm (genenetwork3)[arguments]: Replace check phase to use pytest.
2023-07-04Remove deprecated #:asd-files argument.Arun Isaac
* gn/packages/lisp.scm (sbcl-defstar, sbcl-2am, sbcl-fare-memoization, sbcl-meta, sbcl-scribble), gn/packages/notebooks.scm (sbcl-nb), gn/packages/quality-control.scm (sbcl-qc): Remove #:asd-files argument.
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