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| author | Munyoki Kilyungi | 2023-09-05 14:15:28 +0300 |
|---|---|---|
| committer | Munyoki Kilyungi | 2023-09-05 14:15:28 +0300 |
| commit | 543a0d0afd5205c839c79c27d57b4b43c9742387 (patch) | |
| tree | 77f6c243006f01ee5febba9ad033ee03b8afb3e1 /gn/packages | |
| parent | 01e8768aef5279c31b051266dcd7316c3843fcc9 (diff) | |
| download | guix-bioinformatics-543a0d0afd5205c839c79c27d57b4b43c9742387.tar.gz | |
Adjust how native/propagated inputs are defined for GN3
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'gn/packages')
| -rw-r--r-- | gn/packages/genenetwork.scm | 83 |
1 files changed, 42 insertions, 41 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index 6e5bbce..c7dba3b 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -127,48 +127,49 @@ (inputs (list python-click)) (native-inputs - (list python-hypothesis - python-mypy - python-mypy-extensions - python-pylint - python-pytest - python-pytest-mock)) + `(("python-hypothesis" ,python-hypothesis) + ("python-mypy" ,python-mypy) + ("python-mypy-extensions" ,python-mypy-extensions) + ("python-pylint" ,python-pylint) + ("python-pytest" ,python-pytest) + ("python-pytest-mock" ,python-pytest-mock))) (propagated-inputs - (list gemma-wrapper - python-wrapper - csvdiff - gn-rust-correlation - python-bcrypt ;; Replace use of bcrypt with argon below - python-argon2-cffi - python-flask - python-flask-cors - ;; Not working in Python > 3.8 - ;; python-ipfshttpclient - python-lmdb - python-mysqlclient - python-numpy - python-pandas - ;; python-pingouin << build failing - python-pingouin-without-tests - python-plotly - python-scikit-learn - python-pymonad - python-redis - python-requests - python-scipy - python-authlib - python-sparqlwrapper - python-email-validator - python-xapian-bindings - r-optparse - r-qtl - r-rjson - r-stringi - r-wgcna - r-ctl - rust-qtlreaper - diffutils - yoyo-migrations)) + `(("gemma-wrapper" ,gemma-wrapper) + ("python-wrapper" ,python-wrapper) + ("csvdiff" ,csvdiff) + ("gn-rust-correlation" ,gn-rust-correlation) + ;; Replace use of bcrypt with argon below + ("python-bcrypt" ,python-bcrypt) + ("python-argon2-cffi" ,python-argon2-cffi) + ("python-flask" ,python-flask) + ("python-flask-cors" ,python-flask-cors) + ;; Not working in Python > 3.8 + ;; python-ipfshttpclient + ("python-lmdb" ,python-lmdb) + ("python-mysqlclient" ,python-mysqlclient) + ("python-numpy" ,python-numpy) + ("python-pandas" ,python-pandas) + ;; python-pingouin << build failing + ("python-pingouin-without-tests" ,python-pingouin-without-tests) + ("python-plotly" ,python-plotly) + ("python-scikit-learn" ,python-scikit-learn) + ("python-pymonad" ,python-pymonad) + ("python-redis" ,python-redis) + ("python-requests" ,python-requests) + ("python-scipy" ,python-scipy) + ("python-authlib" ,python-authlib) + ("python-sparqlwrapper" ,python-sparqlwrapper) + ("python-email-validator" ,python-email-validator) + ("python-xapian-bindings" ,python-xapian-bindings) + ("r-optparse" ,r-optparse) + ("r-qtl" ,r-qtl) + ("r-rjson" ,r-rjson) + ("r-stringi" ,r-stringi) + ("r-wgcna" ,r-wgcna) + ("r-ctl" ,r-ctl) + ("rust-qtlreaper" ,rust-qtlreaper) + ("diffutils" ,diffutils) + ("yoyo-migrations" ,yoyo-migrations))) (build-system python-build-system) (arguments (list #:phases |