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path: root/gn/packages/genenetwork.scm
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2024-01-03gn: genenetwork2: Update to 3.11-4.c1d377e.Arun Isaac
* gn/packages/genenetwork.scm (genenetwork2): Update to 3.11-4.c1d377e.
2024-01-03gn: genenetwork3: Update to 0.1.0-5.6bb4a5f.Arun Isaac
* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-5.6bb4a5f.
2024-01-02gn: genenetwork2: Fix path to installed bundled fonts.Arun Isaac
2024-01-02gn: genenetwork2: Install bundled fonts.Arun Isaac
* gn/packages/genenetwork.scm (genenetwork2)[arguments]: Add install-bundled-fonts and fix-font-paths phases.
2024-01-02gn: genenetwork2: Use G-expressions.Arun Isaac
* gn/packages/genenetwork.scm (genenetwork2): Use G-expressions.
2024-01-02Remove genenetwork3 return.Arun Isaac
This was introduced accidentally in 7a4bf91e019fe084f92a90535cbfffb7c119b9a7. * gn/packages/genenetwork.scm: Remove genenetwork3 return.
2024-01-02gn: genenetwork2: Update to 3.11-3.ff67963.Arun Isaac
* gn/packages/genenetwork.scm (genenetwork2): Update to 3.11-3.ff67963.
2024-01-02gn: genenetwork2: Substitute new path to default_settings.py.Arun Isaac
2024-01-02gnqc-py: New packageFrederick Muriuki Muriithi
2023-12-29gn: genenetwork3: Update to 0.1.0-4.093163e.Arun Isaac
2023-12-05gn-auth: add flask-cors dependency.Frederick Muriuki Muriithi
2023-12-05gn-auth: Remove bcrypt dependencyFrederick Muriuki Muriithi
2023-10-27Update dependencies: genenetwork3 and gn-authFrederick Muriuki Muriithi
* genenetwork3: Remove `yoyo-migrations` as a dependency * gn-auth: Use the upstream `yoyo-migrations` * Remove temporary local definition for yoyo-migrations.
2023-10-06genenetwork3: Add python-pyld to propagated-inputs.Munyoki Kilyungi
* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add python-ld. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-09-27gn-auth: Fix missing importFrederick Muriuki Muriithi
2023-09-27gn-auth: List packages to installFrederick Muriuki Muriithi
List all packages to install to hopefully fix failure in `sanity-check` phase.
2023-09-27gn-auth: Use newer setup.pyFrederick Muriuki Muriithi
Use updated setup.py to try and fix issues with the `sanity-check` phase.
2023-09-27gn-auth: Use upstream python-mypyFrederick Muriuki Muriithi
2023-09-27gn-auth: Update commit and hashFrederick Muriuki Muriithi
* Update the commit hash and the hash of the files after updating the guix-bioinformatics channel configurations for the gn-auth channel.
2023-09-27gn-auth: Update commit and hash.Frederick Muriuki Muriithi
2023-09-25Delete python-mypy-0.981.Munyoki Kilyungi
* gn/packages/python.scm (python-mypy-0.981): Delete it. * gn/packages/genenetwork.scm (genenetwork3)[native-inputs]: Replace python-mypy-0.981 with upstream's python-mypy. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-09-20gn: genenetwork2: Add htmx.Munyoki Kilyungi
* gn/packages/genenetwork.scm (genenetwork2) [propagated-inputs]: Add htmx.
2023-09-06gn: gn-auth: Update yoyo and mypyFrederick Muriuki Muriithi
Update yoyo and mypy to allow the use of Python-3.10
2023-09-05gn: genenetwork: Update mypy and yoyoMunyoki Kilyungi
* gn/packages/genenetwork.scm: Import (guix packages). (genenetwork3): Use yoyo-migrations v8.2.0 and python-mypy v0.981. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-09-05Adjust how native/propagated inputs are defined for GN3Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-09-04Revert "Pin python to python@3.8.5"Munyoki Kilyungi
This reverts commit aaa6e53e7b623105d05e67e95186aba5b4671010.
2023-09-04Pin python to python@3.8.5Munyoki Kilyungi
* gn/packages/genenetwork.scm: (genenetwork3, genenetwork2): Using python@3.8.5 Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-31Move gn-auth to (gn packages genenetwork).Arun Isaac
2023-07-05gn: genenetwork3: Update to 0.1.0-3.f52247c.Arun Isaac
* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-3.f52247c.
2023-07-05Run genenetwork3 tests using pytest.Arun Isaac
* gn/packages/genenetwork.scm (genenetwork3)[arguments]: Replace check phase to use pytest.
2023-06-18Remove unused twint from GN2pjotrp
2023-04-19gn: Update GN2 to 3.11-2.bfe557dcFrederick Muriuki Muriithi
2023-04-19gn: Update GN3 to 0.1.0-2.85610fc9Frederick Muriuki Muriithi
2023-03-08gn: genenetwork3: Add python-argon-cffiFrederick Muriuki Muriithi
As part of improving the security of passwords, this commit adds python-argon-cffi that enables use of the better Argon2 password hashing algorithm, rather than the dated bcrypt that is a tad vulnerable to offline cracking.
2023-03-02genenetwork3: New dependency (python-email-validator)Frederick Muriuki Muriithi
* gn/packages/genenetwork.scm: (python-email-validator): New dependency
2022-12-28gn: (genenetwork2): Add python-authlib as a dependencyFrederick Muriuki Muriithi
* gn/packages/genenetwork.scm: (python-authlib): New dependency
2022-12-28gn: (genenetwork2): Add flask-session as a dependencyFrederick Muriuki Muriithi
Flask session already handles a lot of the house-keeping involved with server-side sessions: this commit adds it as a dependency to avoid having to do the house-keeping manually. * gn/packages/genenetwork.scm: (python-flask-session): New dependency
2022-12-23Disable pingouin testsPjotr Prins
2022-12-23Making the build work for genenetworkPjotr Prins
2022-12-20gn: (genenetwork3): Add dependencyFrederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork3): Add python-authlib as a dependency to genenetwork3
2022-12-06gn: (genenetwork3): Update to 0.1.0-2.e781996Frederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork3): Update to version 0.1.0-2.e781996
2022-11-10gn: Add missing imports and package licenses.Efraim Flashner
2022-11-03gn: (gn/packages/genenetwork.scm): Add yoyo-migrations as dependencyFrederick Muriuki Muriithi
* gn/packages/genenetwork.scm: add yoyo-migrations as a dependency.
2022-10-30gn: genenetwork2: Do not depend on python-xapian-bindings.Arun Isaac
Now, only genenetwork3 depends on python-xapian-bindings. genenetwork2 makes use of xapian indirectly through the genenetwork3 API. * gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Remove python-xapian-bindings.
2022-10-28gn: (genenetwork3): Update to 0.1.0-2.faf2739Frederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-2.faf2739
2022-10-18gn: genenetwork3: Depend on python-xapian-bindings.Arun Isaac
* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add python-xapian-bindings.
2022-10-18gn: genenetwork3: Depend on python-pymonad.Arun Isaac
* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add python-pymonad.
2022-10-18gn: genenetwork3: Depend on python-click.Arun Isaac
* gn/packages/genenetwork.scm (genenetwork3)[inputs]: Add python-click.
2022-10-05gn: (genenetwork2): Update to 3.11-2.1328932Frederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork2): Update to 3.11-2.1328932
2022-10-05gn: (genenetwork3): Update to 0.1.0-2.fe1b8beFrederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-2.fe1b8be
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-14 04:03:41 +0000