aboutsummaryrefslogtreecommitdiff
path: root/gn/packages/genenetwork.scm
diff options
context:
space:
mode:
authorFrederick Muriuki Muriithi2024-01-02 10:53:46 +0300
committerFrederick Muriuki Muriithi2024-01-02 12:04:18 +0300
commit9d8990a85f1c321397bef6e879845479e5c4a403 (patch)
treeb91659e4e98534f4a7397ea3a1fcfa805fc4e37f /gn/packages/genenetwork.scm
parent7a4bf91e019fe084f92a90535cbfffb7c119b9a7 (diff)
downloadguix-bioinformatics-9d8990a85f1c321397bef6e879845479e5c4a403.tar.gz
gnqc-py: New package
Diffstat (limited to 'gn/packages/genenetwork.scm')
-rw-r--r--gn/packages/genenetwork.scm42
1 files changed, 42 insertions, 0 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index ff87f99..139b46c 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -467,6 +467,48 @@
(description "Genenetwork installation sumo.")
(license license:agpl3+))))
+(define-public gnqc-py
+ (package
+ (name "gnqc-py")
+ (version "0.0.1")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://gitlab.com/fredmanglis/gnqc_py.git")
+ (commit "c81a3d948b3bc0db20a530fa1aa428b35b5d6145")))
+ (hash
+ (content-hash
+ (base32
+ "1101pql7zpijn36i9phcakfx1r5dcvdf6ix0v4ndjzmzx3d0xyi2")))))
+ (build-system python-build-system)
+ (arguments
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ (invoke "pytest" "-k" "unit_test")))))))
+ (native-inputs
+ `(("python-mypy" ,python-mypy
+ "python-pylint" ,python-pylint
+ "python-pytest" ,python-pytest
+ "python-hypothesis" ,python-hypothesis)))
+ (propagated-inputs
+ `(("gunicorn" ,gunicorn
+ "python-redis" ,python-redis
+ "python-flask" ,python-flask
+ "python-pyyaml" ,python-pyyaml
+ "python-jsonpickle" ,python-jsonpickle
+ "python-mysqlclient" ,python-mysqlclient)))
+ (synopsis "GeneNetwork Quality Control Application")
+ (description
+ "GeneNetwork qc is a quality control application for the data files that
+ eventually are used to add to the data in the GeneNetwork project.")
+ (home-page "https://gitlab.com/fredmanglis/gnqc_py")
+ (license license:agpl3+)))
+
(define-public gn-auth
(package
(name "gn-auth")