| Age | Commit message (Expand) | Author |
|---|
| 2024-04-19 | gn: Add hifiasm....* gn/packages/bioinformatics.scm (hifiasm): New variable.
| Arun Isaac |
| 2024-02-23 | gn: bioinformatics: Import (guix build-system r). | Arun Isaac |
| 2024-02-23 | gn: Add r-stitch....* gn/packages/bioinformatics.scm (r-stitch): New variable.
| Arun Isaac |
| 2024-02-23 | gn: Add vcfpp....* gn/packages/bioinformatics.scm (vcfpp): New variable.
| Arun Isaac |
| 2024-02-23 | gn: Add seqlib....* gn/packages/bioinformatics.scm (seqlib): New variable.
| Arun Isaac |
| 2024-02-23 | gn: Add r-rrbgen....* gn/packages/bioinformatics.scm (r-rrbgen): New variable.
| Arun Isaac |
| 2023-10-19 | Remove bh20-seq-resource....The package is broken, some of its inputs have been removed from
upstream Guix, and we no longer need this package.
* gn/packages/bioinformatics.scm (bh20-seq-resource): Delete variable.
* gn/services/bh20-seq-resource-container.scm: Delete file.
| Arun Isaac |
| 2023-09-26 | pggb: Add missing inputs | Efraim Flashner |
| 2023-09-26 | pggb: wrap with more packages | Efraim Flashner |
| 2023-09-26 | gsl: Provide glibc-hwcaps version. | Efraim Flashner |
| 2023-09-26 | vg: Update package definition | Efraim Flashner |
| 2023-09-26 | seqwish: Provide glibc-hwcaps version | Efraim Flashner |
| 2023-09-26 | seqwish: Build and link against shared library. | Efraim Flashner |
| 2023-09-25 | seqwish: Make package tunable. | Efraim Flashner |
| 2023-09-25 | vg: Link with some shared libraries. | Efraim Flashner |
| 2023-09-24 | pggb: Fix typo. | Efraim Flashner |
| 2023-09-24 | pggb: Provide version with glibc-hwcaps. | Efraim Flashner |
| 2023-09-24 | smoothxg: Link with odgi | Efraim Flashner |
| 2023-09-24 | smoothxg: Link with sdsl-lite | Efraim Flashner |
| 2023-09-24 | seqwish: Link with sdsl-lib | Efraim Flashner |
| 2023-09-24 | pggb: Remove python-pycairo | Efraim Flashner |
| 2023-09-24 | pggb: Add htslib for tabix dependency. | Efraim Flashner |
| 2023-09-22 | Add pggb. | Efraim Flashner |
| 2023-09-22 | vg: Prepare for using a shared library. | Efraim Flashner |
| 2023-09-22 | vg: Update to 1.50.0. | Efraim Flashner |
| 2023-09-21 | mummer: Update to 4.0.0rc1. | Efraim Flashner |
| 2023-09-21 | odgi: Add variant with glibc-hwcaps. | Efraim Flashner |
| 2023-09-21 | wfmash: Fix typos. | Efraim Flashner |
| 2023-09-21 | odgi: Update to 0.8.3. | Efraim Flashner |
| 2023-09-21 | Add smoothxg | Efraim Flashner |
| 2023-09-20 | seqwish: Update to 0.7.9. | Efraim Flashner |
| 2023-09-20 | Add wfmash with glibc-hwcap libraries. | Efraim Flashner |
| 2023-09-19 | Add pafplot | Efraim Flashner |
| 2023-09-19 | Add fastix | Efraim Flashner |
| 2023-09-19 | Add vcfbub | Efraim Flashner |
| 2023-09-19 | gfaffix: Update to 0.1.5. | Efraim Flashner |
| 2023-06-18 | Remove unused twint from GN2 | pjotrp |
| 2023-04-10 | vg: Use curl instead of curl-minimal....curl-minimal has been removed from upstream Guix.
* gn/packages/bioinformatics.scm (vg)[inputs]: Use curl instead of
curl-minimal.
| Arun Isaac |
| 2023-03-22 | bh20-seq-resource: Add version without profile collisions....* gn/packages/bioinformatics.scm (bh20-seq-resource-for-service): New
variable.
* gn/services/bh20-seq-resource-container.scm
(covid19-pubseq-configuration): Use it by default.
| Efraim Flashner |
| 2023-03-22 | bh20-seq-resource: Patch reference to minimap2....* gn/packages/bioinformatics.scm (bh20-seq-resource)[arguments]: Add
phase to hardcode path to minimap2.
[inputs]: Add minimap2.
| Efraim Flashner |
| 2023-03-22 | bh20-seq-resource: Update to 1.0-4.2ae7191....* gn/packages/bioinformatics.scm (bh20-seq-resource): Update to
1.0-4.2ae7191.
[source]: Adjust snippet for changes in source.
[arguments]: Skip tests.
[propagated-inputs]: Add python-shexc-0.7. Remove python-dateutil,
python-flask, python-pycurl, python38-ruaml.yaml-0.15.76, clustalw,
python-twint.
[native-inputs]: Remove git, python-oauth2client, python-uritemplate.
Replace python-pytest-4 with python-pytest-5, python-pytest-runner-2
with python-pytest-runner-4.
| Efraim Flashner |
| 2023-03-22 | Add python-pytest-runner-4....* gn/packages/python.scm (python-pytest-runner-4): New variable.
* gn/packages/bioinformatics.scm (python-pytest-runner-2): MOve to
python.scm
| Efraim Flashner |
| 2022-12-08 | Minor fixes aiming for genenetwork1 | Pjotr Prins |
| 2022-11-30 | gn: Remove upstreamed packages | Efraim Flashner |
| 2022-11-16 | gn: Add graph-genotyper and dependent packages | Efraim Flashner |
| 2022-11-13 | gn: pgr-tk: Unbundle agc. | Efraim Flashner |
| 2022-11-10 | gn: Add missing imports and package licenses. | Efraim Flashner |
| 2022-11-10 | gn: Add pgr-tk | Efraim Flashner |
| 2022-09-24 | gn: Update blobtools. | Efraim Flashner |
| 2022-09-20 | gn: Add blobtools. | Efraim Flashner |
