Remove bh20-seq-resource.

The package is broken, some of its inputs have been removed from
upstream Guix, and we no longer need this package.

* gn/packages/bioinformatics.scm (bh20-seq-resource): Delete variable.
* gn/services/bh20-seq-resource-container.scm: Delete file.

1 files changed, 0 insertions, 73 deletions

diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index 9de6ad8..2832ea6 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -2096,79 +2096,6 @@ reads, also called read-based phasing or haplotype assembly.  It is especially
 suitable for long reads, but works also well with short reads.")
     (license license:expat)))
 
-(define-public bh20-seq-resource
-  (let ((commit "2ae71911cd87ce4f2eabdff21e538267b3270d45")
-        (revision "4"))
-    (package
-      (name "bh20-seq-resource")
-      (version (git-version "1.0" revision commit))
-      (source (origin
-                (method git-fetch)
-                (uri (git-reference
-                       (url "https://github.com/pubseq/bh20-seq-resource")
-                       (commit commit)))
-                (file-name (git-file-name name version))
-                (sha256
-                 (base32 "1k6cc88hrcm77jwpdk2084q0zirv2vlbz3c07nmpbhk1lhqk5x0n"))
-                (modules '((guix build utils)))
-                (snippet
-                 '(begin
-                    (delete-file "gittaggers.py")))))
-      (build-system python-build-system)
-      (arguments
-       (list
-         #:tests? #f    ; Tests can't find pytest
-         #:phases
-         #~(modify-phases %standard-phases
-             (add-after 'unpack 'patch-program-calls
-               (lambda* (#:key inputs #:allow-other-keys)
-                 (substitute* "bh20sequploader/qc_fasta.py"
-                   (("\"minimap2\"")
-                    (string-append "\"" (search-input-file
-                                          inputs "/bin/minimap2")
-                                   "\""))))))))
-      (propagated-inputs
-       (list python-arvados-python-client
-             python-schema-salad
-             python-magic
-             python-pyshex
-             python-pyshexc-0.7
-             python-py-dateutil
-
-             ;; for the web
-             python-flask
-             python-pyyaml
-             python-redis
-
-             ;; and for the service
-             python
-             gunicorn))
-      (inputs
-       (list minimap2))
-      (native-inputs
-       (list python-pytest-4                ; < 6
-             python-pytest-runner-4))       ; < 5
-      (home-page "https://github.com/pubseq/bh20-seq-resource")
-      (synopsis
-       "Tool to upload SARS-CoV-19 sequences and service to kick off analysis")
-      (description "This repository provides a sequence uploader for the
-COVID-19 Virtual Biohackathon's Public Sequence Resource project.  You can use
-it to upload the genomes of SARS-CoV-2 samples to make them publicly and freely
-available to other researchers.")
-      (license license:asl2.0))))
-
-;; This version has no profile collisions.
-(define-public bh20-seq-resource-for-service
-  (package
-    ;(inherit (fix-profile-collisions-for-bh20 bh20-seq-resource))
-    (inherit
-      ((package-input-rewriting/spec
-        `(("python-google-api-core" . ,(const python-google-api-core-1))
-          ("python-google-auth" . ,(const python-google-auth-1))
-          ("python-pyparsing" . ,(const python-pyparsing-2.4.7))))
-       bh20-seq-resource))
-    (properties `((hidden? . #t)))))
-
 (define-public python-scanpy-git
   (let ((commit "590d42309f9ed6550d7b887039990edfc1ac7648") ; April 22, 2020
         (revision "1"))