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path: root/gn/packages/bioinformatics.scm
AgeCommit message (Collapse)Author
2022-04-10gn: vg: Update to 1.39.0.Efraim Flashner
2022-03-31gn: Update gfaffix to 0.1.3Efraim Flashner
2022-03-20gn: upstream python-scikit-allelEfraim Flashner
2022-03-16gn: Add python-pixy.Efraim Flashner
2022-02-27gn: Add willowmapEfraim Flashner
2022-01-23gn: Add verkko.Efraim Flashner
2022-01-23gn: graphaligner: Fix building and update to 1.0.14Efraim Flashner
2022-01-09gn: Unconditionally use current rust package.Efraim Flashner
2021-12-29gnu: Add python2-bx-python.Arun Isaac
python2-bx-python has been removed from upstream Guix. * gn/packages/bioinformatics.scm (python2-bx-python): New variable.
2021-12-29Reference non-public rust packages using @@.Arun Isaac
rust-1.47 and rust-1.49 are no longer exported from (gnu packages rust). * gn/packages/bioinformatics.scm (gfaffix): Reference rust-1.49 using @@. * gn/packages/crates-io.scm (rust-handlegraph-0.7): Reference rust-1.47 using @@.
2021-12-06gn: Add mutation-simulatorEfraim Flashner
2021-11-16gn: metaeuk: enable tests.Efraim Flashner
2021-11-15gn: Add sepp, buscoEfraim Flashner
2021-11-14gn: Add augustusEfraim Flashner
2021-11-14gn: add metaeukEfraim Flashner
2021-11-14gn: bh2-seq-resource: Update source uri, homepageEfraim Flashner
2021-10-12gn: Update gfaffix to 0.1.2.2.Efraim Flashner
2021-09-29gn: Add minia.Efraim Flashner
2021-09-03update pangenieErik Garrison
2021-08-19gn: make sure we use the correct rust versionEfraim Flashner
2021-08-11gn: Add pirs.Efraim Flashner
2021-08-11gn: Add pbsim2.Efraim Flashner
2021-08-11gn: Add pangenie.Efraim Flashner
2021-08-02clarify that this is an old seqwishErik Garrison
2021-08-02gn: gfaffix: Don't hardcode rust-handlegraph package versionEfraim Flashner
2021-08-02gn: rust-handlegraph-0.7: Update to 0.7.0-alpha.9.Efraim Flashner
2021-08-02get bugfix in rs-handlegraphErik Garrison
2021-08-02gn: Add gfaffix.Efraim Flashner
2021-08-01gn: Adjust python-whatshap for upstream changesEfraim Flashner
2021-07-21gn: Add python-whatshapEfraim Flashner
2021-07-15gn: Provide rtg.cfg for rtg-tools.Efraim Flashner
2021-07-11gn: Add rtg-toolsEfraim Flashner
* gn/packages/java.scm (rtg-tools): New variable. * gn/packages/bioinformatics (hap.py)[native-inputs]: Remove field. [inputs]: Add rtg-tools. [arguments]: Replace rtg-tools implementation.
2021-07-08gn: Add hap.pyEfraim Flashner
2021-06-21gn: Update vgEfraim Flashner
2021-05-26gn: Add pbmm2Efraim Flashner
2021-05-20gn: add bam2fastxEfraim Flashner
2021-05-11gn: genome-browser: Fix freetype error.Efraim Flashner
2021-05-06gn: ucsc genome browser: enable tests.Efraim Flashner
2021-05-04gn: genome browser tests goodEfraim Flashner
2021-05-03update vgErik Garrison
2021-04-30gn: genome-browser: update package, serviceEfraim Flashner
2021-04-30gn: genome browser: nearly have the graph working.Efraim Flashner
2021-04-25gn: ucsc genome browser: functioning web service?Efraim Flashner
2021-04-22gn: Initial ucsc-genome-browser and service.Efraim Flashner
2021-03-04gn: Update vg to 1.30.0.Efraim Flashner
2020-11-23upstream cwltools and dependant packagesEfraim Flashner
2020-11-10gn: bh20-seq-resource: Add python-twint as inputBonfaceKilz
* gn/packages/bioinformatics.scm (bh20-seq-resource): [propagated-input]: Add python-twint.
2020-11-05gn: bh20-seq-resource: Add python-redisBonfaceKilz
* gn/packages/bioinformatics.scm [propagated-inputs]: Add python-redis since it's required for the twitter-feed. See: https://github.com/BonfaceKilz/feedanalyser/
2020-09-06vg: Update to 1.26.1.Efraim Flashner
2020-09-01update vgEfraim Flashner
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-05 13:42:23 +0000