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2022-08-19Upgrade guix channel to commit 89d427e4be.Arun Isaac
* .guix-channel: Upgrade guix channel to commit 89d427e4be35fe79c23e2785a55c19df781fb77e.
2022-08-18 gn: bioinformatics: Add import of moved python-setuptools-scmPjotr Prins
* gn/packages/bioinformatics.scm
2022-08-17gn: genenetwork2: Update to 3.11-2.bc589b2.Frederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork2) Update to 3.11-2.bc589b2.
2022-08-15gn: genenetwork2: Update to 3.11-2.3cfd0ec.Frederick Muriuki Muriithi
* gn/packages/crates-io.scm (genenetwork2) Update to 3.11-2.3cfd0ec.
2022-08-15gn: genenetwork3: Update to 0.1.0-2.6db3b2a.Frederick Muriuki Muriithi
* gn/packages/crates-io.scm (genenetwork3) Update to 0.1.0-2.6db3b2a.
2022-08-15gn: gn-rust-correlation: Update to 0.1.4-0.09c579f.Frederick Muriuki Muriithi
* gn/packages/crates-io.scm (gn-rust-correlation) Update to 0.1.4-0.09c579f.
2022-08-08gn: gn-rust-correlation: Update to 0.1.4-0.3492daa.Frederick Muriuki Muriithi
* gn/packages/crates-io.scm (gn-rust-correlation) Update to 0.1.4-0.3492daa.
2022-08-04gn: javascript-jquery-ui: Update to 1.13.2Alexander_Kabui
* gn/packages/javascript.scm (javascript-jquery-ui): Update to 1.13.2. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2022-08-03gn: javascript-jquery-ui: Remove duplicate package.Alexander_Kabui
javascript-jquery-ui@1.9.1 is packaged twice * gn/packages/javascript.scm (javascript-jquery-ui): Delete duplicate package. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2022-08-02gn: genenetwork2: Update to 3.11-2.85ad783.Frederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork2): Update to 3.11-2.85ad783. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2022-07-29gn: genenetwork3: Update itFrederick Muriuki Muriithi
* gn/packages/genenetwork.scm (commit): Update it. (source): Update hash. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2022-07-29gn: busco: Update to 5.4.1.Efraim Flashner
2022-07-29gnu: pplacer: Fix building.Efraim Flashner
* gn/packages/ocaml.scm (ocaml4.07-lwt-5.5.0): New variable. (build-with-ocaml4.07): New procedure. * gn/packages/bioinformatics.scm (pplacer): Wrap with build-with-ocaml4.07.
2022-07-29gn: Add r-bracerEfraim Flashner
2022-07-22gn: Update gn-rust-correlationAlexander_Kabui
* gn/packages/crates-io.scm (commit): Update it. (source): Update hash. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2022-07-22gn: genenetwork2: Add gn-rust-correlation.Alexander_Kabui
* gn/packages/genenetwork.scm: (genenetwork2) [propagated-inputs]: Add gn-rust-correlations. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2022-07-11gn: tissue: Update to 0.1.0-3.6d6285d.Arun Isaac
* gn/packages/gemini.scm (tissue): Update to 0.1.0-3.6d6285d. [inputs]: Add guile-filesystem.
2022-07-01gn: tissue: Update to 0.1.0-2.b15edb1.Arun Isaac
* gn/packages/gemini.scm (tissue): Update to 0.1.0-2.b15edb1.
2022-06-30gn: tissue: Update to 0.1.0-1.fd6668c.Arun Isaac
* gn/packages/gemini.scm (tissue): Update to 0.1.0-1.fd6668c.
2022-06-29gn: genenetwork3: Add gn-rust-correlation.BonfaceKilz
* gn/packages/genenetwork.scm: Import module crates-io. (genenetwork3) [propagated-inputs]: Add gn-rust-correlations.
2022-06-29gn: Add gn-rust-correlation.Alexander_Kabui
* gn/packages/crates-io.scm (gn-rust-correlation): New variable Signed-off-by: BonfaceKilz <me@bonfacemunyoki.com>
2022-06-29gn: Add rust-gsl.Alexander_Kabui
* gn/packages/crates-io.scm (rust-gsl): New variable. Signed-off-by: BonfaceKilz <me@bonfacemunyoki.com>
2022-06-29gn: Add rust-gsl-sys.Alexander_Kabui
* gn/packages/crates-io.scm (rust-gsl-sys): New variable. Signed-off-by: BonfaceKilz <me@bonfacemunyoki.com>
2022-06-29gn: tissue: Update to 0.1.0-0.2866d0c.Arun Isaac
* gn/packages/gemini.scm (tissue): Update to 0.1.0-0.2866d0c.
2022-06-29gn: tissue: Update to 0.1.0-0.2ef55e6.Arun Isaac
* gn/packages/gemini.scm (tissue): Update to 0.1.0-0.2ef55e6.
2022-06-29gn: gitea: Update to 1.15.11.Efraim Flashner
2022-06-29gn: tissue: Update to 0.1.0-0.983fc85.Arun Isaac
* gn/packages/gemini.scm: Do not import (gnu packages version-control). Import (gnu packages guile-xyz) and (guix gexp). (tissue): Update to 0.1.0-0.983fc85.
2022-06-21gn: genenetwork2: Update itBonfaceKilz
* gn/packages/genenetwork.scm (commit): Update it. (source): Update hash.
2022-06-21gn: Update genenetwork3BonfaceKilz
* gn/packages/genenetwork.scm (commit): Update it. (source): Update hash. (propagated-inputs): Remove python-ipfshttpclient.
2022-06-21gn: Add quast.Efraim Flashner
2022-06-21gn: metaeuk: Fix building package.Efraim Flashner
2022-06-14gn: genenetwork3: Use upstream python-pingouin.Arun Isaac
* gn/packages/genenetwork.scm (python-seaborn-without-tests, python-pingouin-with-working-python-seaborn): Delete variables. (genenetwork3)[propagated-inputs]: Replace python-pingouin-with-working-python-seaborn with upstream python-pingouin.
2022-06-14Update guix dependency to 6f75565b4ec3b8a7247699c327a3b3196c787f76.Arun Isaac
2022-06-14Update guix dependency to 824f2afcf0ffa7d515b04e360fa49a6b0c4a7753.Arun Isaac
2022-06-14Depend on specific commit of Guix upstream.Arun Isaac
* .guix-channel: Depend on specific commit of Guix upstream. * README.org: Update recommended channels.scm and explain dependence on specific commit.
2022-06-10gn: Update genenetwork3BonfaceKilz
* gn/packages/genenetwork.scm (commit): Update it. (source): Update hash. (propagated-inputs): Add python-lmdb.
2022-06-07gn: hap.py: Add previously missing inputs.Efraim Flashner
2022-06-07gn: Fix building python2-bx-python.Efraim Flashner
2022-06-07gn: pplacer-scripts: Update argument field.Efraim Flashner
2022-06-07gn: python2-biopython: Fix building package.Efraim Flashner
2022-06-07gn: Fix building python2-rpy2.Efraim Flashner
2022-06-07gn: Hide inputs which have been dropped by Guix.Efraim Flashner
2022-06-07gn: Add missing module importsEfraim Flashner
2022-06-07gn: cleanup yaj importsEfraim Flashner
2022-06-01gn: Add python2-biopython.Arun Isaac
python2-biopython has been removed from Guix upstream. * gn/packages/bioinformatics.scm (python2-biopython): New variable.
2022-06-01gn: bioinformatics: Import (gnu packages ocaml).Arun Isaac
* gn/packages/bioinformatics.scm: Import (gnu packages ocaml) required by dependencies of pplacer.
2022-06-01gnu: Add pplacer.Arun Isaac
pplacer and pplacer-scripts have been removed from Guix upstream. * gn/packages/bioinformatics.scm (pplacer, pplacer-scripts): New variables.
2022-06-01gnu: Add python-pytest-runner-2.Arun Isaac
python-pytest-runner-2 has been removed from Guix upstream. * gn/packages/bioinformatics.scm (python-pytest-runner-2): New variable.
2022-06-01gn: Adjust vg for other architecturesEfraim Flashner
2022-06-01ruby-cbor upstreamedEfraim Flashner
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