diff options
| author | Efraim Flashner | 2022-07-29 02:08:00 +0300 |
|---|---|---|
| committer | Efraim Flashner | 2022-07-29 02:12:14 +0300 |
| commit | 57ba3dac9c697df3ff84d9e86d91b66566bc01d8 (patch) | |
| tree | f8101b7296415343165f9d034452a1f9f06abf7e | |
| parent | 0de2d3fbf365a63d4158c89432886aa9b95f12cc (diff) | |
| download | guix-bioinformatics-57ba3dac9c697df3ff84d9e86d91b66566bc01d8.tar.gz | |
gnu: pplacer: Fix building.
* gn/packages/ocaml.scm (ocaml4.07-lwt-5.5.0): New variable.
(build-with-ocaml4.07): New procedure.
* gn/packages/bioinformatics.scm (pplacer): Wrap with
build-with-ocaml4.07.
| -rw-r--r-- | gn/packages/bioinformatics.scm | 4 | ||||
| -rw-r--r-- | gn/packages/ocaml.scm | 27 |
2 files changed, 30 insertions, 1 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index 8a6de69..2055785 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -21,6 +21,7 @@ #:use-module (gnu packages) #:use-module (gn packages crates-io) #:use-module (gn packages java) + #:use-module (gn packages ocaml) #:use-module (gn packages python) #:use-module (gn packages twint) #:use-module (gnu packages algebra) @@ -2661,6 +2662,7 @@ protein alignments and syntenic genomic alignments.") (define-public pplacer (let ((commit "807f6f3")) + (build-with-ocaml4.07 (package (name "pplacer") ;; The commit should be updated with each version change. @@ -2774,7 +2776,7 @@ reference alignment. Pplacer is designed to be fast, to give useful information about uncertainty, and to offer advanced visualization and downstream analysis.") (home-page "https://matsen.fhcrc.org/pplacer/") - (license license:gpl3)))) + (license license:gpl3))))) (define-public python2-biopython (python2-package python-biopython)) diff --git a/gn/packages/ocaml.scm b/gn/packages/ocaml.scm new file mode 100644 index 0000000..4aa2543 --- /dev/null +++ b/gn/packages/ocaml.scm @@ -0,0 +1,27 @@ +(define-module (gn packages ocaml) + #:use-module (guix packages) + #:use-module (guix git-download) + #:use-module (guix build-system ocaml) + #:use-module (gnu packages) + #:use-module (gnu packages ocaml)) + +;; This is the last version supported by ocaml-4.07. +(define-public ocaml4.07-lwt-5.5.0 + (package-with-ocaml4.07 + (package + (inherit ocaml-lwt) + (name "ocaml-lwt") + (version "5.5.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/ocsigen/lwt") + (commit version))) + (file-name (git-file-name name version)) + (sha256 (base32 + "1jbjz2rsz3j56k8vh5qlmm87hhkr250bs2m3dvpy9vsri8rkzj9z")))) + (properties '())))) + +(define-public build-with-ocaml4.07 + (package-input-rewriting/spec `(("ocaml4.07-lwt" . ,(const ocaml4.07-lwt-5.5.0))))) |