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2025-03-14gn-auth: Upgrade to commit 8ff5d55.Frederick Muriuki Muriithi
2025-03-14genenetwork2: upgrade to commit 9c0ddee.Frederick Muriuki Muriithi
2025-03-14gn-auth: Upgrade to commit c70188b.Frederick Muriuki Muriithi
2025-03-12gn-uploader: Upgrade bootstrap to version 5.3.3Frederick Muriuki Muriithi
2025-03-12web-bootstrap: New variant, version 5.3.3Frederick Muriuki Muriithi
2025-03-12gn-uploader: Upgrade jquery and datatables, add buttons and scrollerFrederick Muriuki Muriithi
2025-03-12javascript-datatables-buttons: Provide new variant, version 3.2.2Frederick Muriuki Muriithi
2025-03-12javascript-datatables-2.2.2: Don't inherit from 1.10.19Frederick Muriuki Muriithi
For some reason, inheriting from version 1.10.19 leads to the package installing from the older 1.10.19 version rather than the newer 2.2.2
2025-03-11javascript-datatables-scroller-2.4.3: New variant ↵Frederick Muriuki Muriithi
javascript-datatables-scroller-2.4.3
2025-03-11javascript-datatables-scroller-style: New variant ↵Frederick Muriuki Muriithi
javascript-datatables-scroller-style-2.4.3
2025-03-11javascript-datatables-select: Upgrade to version 3.0.0.Frederick Muriuki Muriithi
2025-03-11javascript-datatables: New variant javascript-datatables-2.2.2Frederick Muriuki Muriithi
2025-03-11javascript-jquery: New variant javascript-jquery-1.12.4Frederick Muriuki Muriithi
2025-03-10gn-uploader: add javascript-datatables-select as dependency.Frederick Muriuki Muriithi
2025-03-10javascript-datatables-select: New package.Frederick Muriuki Muriithi
Add the "Select" extension for javascript-datatables.
2025-03-07Genenetwork3: Upgrade to commit 4e9bfd1.Frederick Muriuki Muriithi
2025-03-05gn-correlation: Upgrade to commit d7b1fd6.Alexander_Kabui
* gn/packages/crate-io.scm (gn-rust-correlation): Update to d7b1fd6. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-03-03genenetwork2: Upgrade to commit 4d0335b.Frederick Muriuki Muriithi
2025-03-01genenetwork2: Replace python-pillow with python-pillow-9.Alexander_Kabui
* gn/packages/genenetwork.scm (genenetwork2) [propagated-inputs]: Use python-pilow-9. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-03-01gn: Add python-pillow-9.Alexander_Kabui
* gn/packages/python.scm (python-pillow-9): New variable. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-02-28genenetwork3: upgrade to commit d314a08.Frederick Muriuki Muriithi
2025-02-28gn-auth: Upgrade to b516826.Munyoki Kilyungi
2025-02-27genenetwork2: Remove python-sqlalchemy.Munyoki Kilyungi
* gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Delete python-sqlalchemy. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-02-26python-flask-session: Override package with egregious name.Frederick Muriuki Muriithi
Redefine package, making use of an egregious name to force us to get rid of it once we pin a guix channel with an updated python-flask-session.
2025-02-26genenetwork3: upgrade to commit 89b941b.Frederick Muriuki Muriithi
2025-02-25python-flask-session: Provide stop-gap to fix build failures.Frederick Muriuki Muriithi
2025-02-25python-authlib: upgrate to version 1.5.0.Frederick Muriuki Muriithi
2025-02-25Replace %gnu-build-system-modules with %default-gnu-imported-modulesFrederick Muriuki Muriithi
Replace the deprecated %gnu-build-system-modules with the newer %default-gnu-imported-modules in order to quiet the deprecation notice when building stuff from guix-bioinformatics.
2025-02-25gn-libs: Add required, build-specific dependencies.Frederick Muriuki Muriithi
2025-02-24python: python-flask-debugtoobar: Update to 0.16.0Munyoki Kilyungi
* gn/packages/python.scm (python-flask-debugtoolbar): [source]: Use github URL instead of PyPi. [build-system]: use pyproject-build-system. [native-inputs]: Add python-pytest. [propagated-inputs]: Add python-flit-core and python-flask-sqlalchemy.
2025-02-24Upgrade guix channel to 61428cc.Arun Isaac
2025-02-24Upgrade guix channel to c84ba4f.Arun Isaac
* .guix-channel: Upgrade guix channel to c84ba4f. * gn/packages/crates-io.scm: Import (gnu packages crates-check) for rust-criterion. * gn/packages/crates-io.scm, gn/packages/bioinformatics.scm: Import (gnu packages crates-compression) for rust-flate2.
2025-02-21Genenetwork2: Upgrade to commit 96433ed.Munyoki Kilyungi
2025-02-21Genenetwork3: Upgrade to c01aa26.Munyoki Kilyungi
2025-02-19Genenetwork2: Upgrade to commit 2a3df8c.Frederick Muriuki Muriithi
2025-02-19Genenetwork3: Upgrade to commit 99fd507.Frederick Muriuki Muriithi
2025-02-19gn-uploader: Upgrade to commit 64c404e.Frederick Muriuki Muriithi
2025-02-19gn-auth: upgrade to commit 073395f.Frederick Muriuki Muriithi
2025-02-19gn-guile: Update gn-guile.Munyoki Kilyungi
* gn/packages/guile.scm: Import guile-lmdb and guile-lib. (gn-guile): Update to 169d26710c978484f8e9464a95be6eaa47fa704e. Also, make lmdb-publishdata-export script executable. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-02-19gn: genenetwork2: Add javascript-xterm, javascript-xterm-style.Alexander_Kabui
* gn/packages/genenetwork.scm (genenetwork2) [propagated-inputs]: Add javascript-xterm, javascript-xterm-style. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-02-19gn: javascript: Update javascript-xterm, javascript-xterm-style.Alexander_Kabui
* gn/packages/javascript.scm (javascript-xterm): Update to 5.3.0 * gn/packages/javascript.scm (javascript-xterm-style): Update to 5.3.0 Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-02-17gn: pggb: Use wfmash-0.14 instead of the latest wfmash.Arun Isaac
* gn/packages/bioinformatics.scm (pggb)[inputs]: Replace wfmash with wfmash-0.14.
2025-02-17gn: Add wfmash-0.14.Arun Isaac
* gn/packages/bioinformatics.scm (wfmash-0.14): New variable.
2025-02-11gn: pggb: Update to 0.7.2.Arun Isaac
* gn/packages/bioinformatics.scm (pggb): Update to 0.7.2.
2025-02-11gn: pggb: Remove unused dependencies.Arun Isaac
These dependencies are referred to in the documentation and put into the Docker image, but are not actually used by pggb. * gn/packages/bioinformatics.scm (pggb)[inputs]: Remove fastix, mummer, pafplot and vcflib.
2025-02-11gn: odgi: Disable tests.Arun Isaac
* gn/packages/bioinformatics.scm (odgi): Disable tests.
2025-02-10gn-guile: Make dependencies available in profile after buildFrederick Muriuki Muriithi
2025-02-10genenetwork2: Upgrade to commit 4f9a46e.Frederick Muriuki Muriithi
2025-02-04gn-uploader: Upgrade to commit d8b58c3.Frederick Muriuki Muriithi
2025-02-03gn-auth: upgrade to commit 8e64f7f.Frederick Muriuki Muriithi
generated by cgit v1.2.3 (git 2.47.1) at 2025-03-30 22:03:24 +0000