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| author | Arun Isaac | 2025-02-11 15:56:38 +0000 |
|---|---|---|
| committer | Arun Isaac | 2025-02-11 16:05:32 +0000 |
| commit | e13e3d6b32f1261f80f4e122d1c4a47785e0e4f6 (patch) | |
| tree | 5c2704504d4192a732c823432c0acaa6432543f2 | |
| parent | ae32314516abba8fa64165d5c0439908f971b2b2 (diff) | |
| download | guix-bioinformatics-e13e3d6b32f1261f80f4e122d1c4a47785e0e4f6.tar.gz | |
gn: pggb: Remove unused dependencies.
These dependencies are referred to in the documentation and put into the Docker image, but are not actually used by pggb. * gn/packages/bioinformatics.scm (pggb)[inputs]: Remove fastix, mummer, pafplot and vcflib.
| -rw-r--r-- | gn/packages/bioinformatics.scm | 8 |
1 files changed, 0 insertions, 8 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index bfc0cdb..2e799ea 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -2635,11 +2635,8 @@ multiple sequence alignment.") "bedtools" "gfaffix" "htslib" - "fastix" "multiqc" - "mummer" "odgi" - "pafplot" "parallel" "pigz" "python" @@ -2651,7 +2648,6 @@ multiple sequence alignment.") "smoothxg" "time" "vcfbub" - "vcflib" "vg" "wfmash")))))) (list (string-append out "/bin/pggb") @@ -2673,11 +2669,8 @@ multiple sequence alignment.") gfaffix guile-3.0 ; for wrap-script htslib ; tabix - fastix multiqc - mummer odgi - pafplot parallel pigz python @@ -2690,7 +2683,6 @@ multiple sequence alignment.") smoothxg time vcfbub - vcflib vg wfmash)) (home-page "https://doi.org/10.1101/2023.04.05.535718") |