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2025-12-15Restore 'guix channel as dependencyFrederick Muriuki Muriithi
Restore an unpinned 'guix channel as a dependency of this channel in an attempt to resolve issues with the automated build of the guix-bioinformatics channel in the genenetwork CI/CD system.
2025-12-01Do not depend on the guix and guix-forge channels.Arun Isaac
2025-11-23Use correct introductory commit for the guix-rust-past-crates channel.Arun Isaac
2025-11-05Remove quote.Frederick Muriuki Muriithi
2025-11-03Fix guix-forge channel.Frederick Muriuki Muriithi
While we do not directly depend on guix-forge within guix-bioinformatics, our deployment does. Sometimes, pulling in the latest version of guix-forge leads to a failure to build the appropriate guix profiles to use to (re)build containers. This commit fixes a commit for guix-forge to be used for building: - packages in this system (guix-forge is not used for this) - Genenetwork's deployment (guix-forge is needed) Essentially, this commit works simply to keep track of compatible guix-forge commits for the guix (mainline) commit that we have chosen for guix-bioinformatics.
2025-10-06guix-past: Update channel commit.Frederick Muriuki Muriithi
2025-10-06Add guix-rust-past-crates to list of channel dependencies.Frederick Muriuki Muriithi
Old rust packages have been removed from mainline guix and moved to the guix-rust-past-crates channel. This commit provides the channel giving access to the old packages.
2025-10-02Update pinned guix to commit 0a474070.Frederick Muriuki Muriithi
2025-08-18Update pinned guix channel to commit 34453b9.Frederick Muriuki Muriithi
2025-08-11Provide new URI for guix-past channel.Frederick Muriuki Muriithi
2025-08-11Upgrade pinned guix channel to commit 28a1649.Frederick Muriuki Muriithi
2025-07-21Point guix in .guix-channel to codeberg.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-02-24Upgrade guix channel to 61428cc.Arun Isaac
2025-02-24Upgrade guix channel to c84ba4f.Arun Isaac
* .guix-channel: Upgrade guix channel to c84ba4f. * gn/packages/crates-io.scm: Import (gnu packages crates-check) for rust-criterion. * gn/packages/crates-io.scm, gn/packages/bioinformatics.scm: Import (gnu packages crates-compression) for rust-flate2.
2024-10-25Upgrade guix channel to 2394a7f.Arun Isaac
* .guix-channel: Upgrade guix channel to 2394a7f. * gn/packages/bioinformatics.scm (pplacer)[inputs]: Replace gsl-static with (gsl "static"). * gn/packages/ocaml.scm (ocaml4.07-gsl-1)[inputs]: Replace gsl-static with (gsl "static"). * gn/packages/static.scm (wfmash-static)[inputs]: Replace gsl-static with (gsl "static").
2024-03-11Upgrade guix channel to b0b988c.Arun Isaac
2024-02-28Upgrade guix channel to aeaa390.Arun Isaac
2024-02-23Upgrade guix channel to e7990b1.Arun Isaac
2024-02-22Upgrade guix channel to 58233e6.Arun Isaac
2023-10-19Upgrade guix channel to 330b94e.Arun Isaac
2023-09-05Update pinned guix versionMunyoki Kilyungi
.guix-channel: Use guix at commit 8d70ff3a49f7cdf0eab93b3a1c54ec2f016afc4a. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-09-04Remove guix-forge channelMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-09-04Specify default branch for forge channelMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-09-04Add trailing slash to forge urlMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-09-04Fix channel introductionMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-09-04Fix channel introductionMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-09-04Fix channel introduction in guix-forgeMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-09-04Add guix-forge as an extra channel dependencyMunyoki Kilyungi
* .guix-channel: Add guix-forge. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-08-31Downgrade guix to a4e9842.Arun Isaac
2023-08-31Revert "Pin guix-bioinformatics to commit with Python-3.9"Arun Isaac
This reverts commit 0d743eb249bbdb67009d23ee53b2ee0ae881f725.
2023-08-31Pin guix-bioinformatics to commit with Python-3.9Frederick Muriuki Muriithi
A number of GeneNetwork services/applications will not run with Python-3.10. This commit pins guix-bioinformatics to a specific commit to allow use of the older Python-3.10 before we are able to update everything needed to get them running on Python-3.10
2023-06-29Upgrade guix channel to d4e9ad2.Arun Isaac
2023-06-23Fix indentation.Arun Isaac
* .guix-channel: Fix indentation.
2023-06-22Fix "channel dependency has an invalid introduction field" errorMunyoki Kilyungi
* .guix-channel: Update how channel dependencies are defined to match: https://guix.gnu.org/manual/en/html_node/Declaring-Channel-Dependencies.html
2023-04-10Upgrade guix channel to a9a6432.Arun Isaac
2023-01-20Upgrade guix channel to 2491a60.Arun Isaac
2022-09-14Upgrade guix channel to 5b35626374.Arun Isaac
2022-08-19Upgrade guix channel to commit 89d427e4be.Arun Isaac
* .guix-channel: Upgrade guix channel to commit 89d427e4be35fe79c23e2785a55c19df781fb77e.
2022-06-14Update guix dependency to 6f75565b4ec3b8a7247699c327a3b3196c787f76.Arun Isaac
2022-06-14Update guix dependency to 824f2afcf0ffa7d515b04e360fa49a6b0c4a7753.Arun Isaac
2022-06-14Depend on specific commit of Guix upstream.Arun Isaac
* .guix-channel: Depend on specific commit of Guix upstream. * README.org: Update recommended channels.scm and explain dependence on specific commit.
2020-11-12Update .guix-channelEfraim Flashner
2020-07-05gn: Use the guix-past channel.Efraim Flashner
Adjust for python-2.4 being in the guix-past channel.
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