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-rw-r--r--gn/packages/cwl.scm15
1 files changed, 14 insertions, 1 deletions
diff --git a/gn/packages/cwl.scm b/gn/packages/cwl.scm
index a327187..96dad02 100644
--- a/gn/packages/cwl.scm
+++ b/gn/packages/cwl.scm
@@ -4,7 +4,8 @@
#:use-module (guix packages)
#:use-module (guix build-system python)
#:use-module (gnu packages)
- #:use-module (gnu packages bioinformatics))
+ #:use-module (gnu packages bioinformatics)
+ #:use-module (gnu packages node)
(define-public cwl-runner
@@ -28,3 +29,15 @@
"Common workflow language alternate entry point to allow cwl-runner
script as an implementation-agnostic script interpreter.")
(license license:asl2.0)))
+
+;; python-toil tightly integrates with cwltool using it as a library. So,
+;; create a library version of cwltool where inputs become propagated inputs.
+(define-public python-cwltool
+ (package
+ (inherit cwltool)
+ (name "python-cwltool")
+ (inputs
+ (list node))
+ (propagated-inputs
+ (modify-inputs (package-inputs cwltool)
+ (delete "node")))))