diff options
Diffstat (limited to 'gn/packages')
| -rw-r--r-- | gn/packages/bnw.scm | 140 |
1 files changed, 91 insertions, 49 deletions
diff --git a/gn/packages/bnw.scm b/gn/packages/bnw.scm index 5c97eab..043077d 100644 --- a/gn/packages/bnw.scm +++ b/gn/packages/bnw.scm @@ -14,7 +14,7 @@ (define-public bnw (let ((commit "eb6b002b924694808384f1a8d7c6d1121806ae04") - (revision "5")) + (revision "6")) (package (name "bnw") (version (git-version "1.22" revision commit)) ; June 28, 2019 @@ -86,59 +86,101 @@ (("rmdir ") (string-append (which "rmdir") " ")) (("wc ") (string-append (which "wc") " "))) #t))) - ;(add-after 'patch-source-shebangs 'replace-javascript - ; (lambda* (#:key inputs #:allow-other-keys) - ; (let ( - ; (jquery (assoc-ref inputs "jquery")) - ; (awesome (assoc-ref inputs "awesome")) - ; (cyto (assoc-ref inputs "cytoscape")) - ; (cyto2 (assoc-ref inputs "cytoscape-2")) - ; (cs-dagre (assoc-ref inputs "cyto-dagre")) - ; (d3js (assoc-ref inputs "d3js")) - ; (d3js-multi (assoc-ref inputs "d3js-multi")) - ; (dagre (assoc-ref inputs "dagre")) - ; (lodash (assoc-ref inputs "lodash")) - ; (canvas-toblob (assoc-ref inputs "canvas-toblob")) - ; (filesaver (assoc-ref inputs "filesaver")) - ; (panzoom (assoc-ref inputs "panzoom")) - ; (js-path "/share/genenetwork2/javascript/") - ; ) - ;(substitute* "sourcecodes/layout_cyto.php" - ; (("https://cdnjs.cloudflare.com/ajax/libs/cytoscape/3.7.1/cytoscape.min.js") - ; (string-append cyto js-path "cytoscape/cytoscape.min.js")) - ; (("https://cdnjs.cloudflare.com/ajax/libs/cytoscape/2.7.29/cytoscape.min.js") - ; (string-append cyto2 js-path "cytoscape/cytoscape.min.js")) - ; (("http://spades.bioinf.spbau.ru/~alla/graph_viewer/js/cytoscape-dagre.js") - ; (string-append cs-dagre js-path "cytoscape-dagre/cytoscape-dagre.js")) - ; (("https://unpkg.com/dagre@0.7.4/dist/dagre.js") - ; (string-append dagre js-path "dagre/dagre.js")) - ; (("https://cdnjs.cloudflare.com/ajax/libs/cytoscape-panzoom/2.5.3/cytoscape.js-panzoom.css") - ; (string-append panzoom js-path "cytoscape-panzoom/cytoscape.js-panzoom.css")) - ; (("https://cdnjs.cloudflare.com/ajax/libs/cytoscape-panzoom/2.5.3/cytoscape-panzoom.js") - ; (string-append panzoom js-path "cytoscape-panzoom/cytoscape-panzoom.js")) - ; (("https://cdnjs.cloudflare.com/ajax/libs/font-awesome/4.0.3/css/font-awesome.css") - ; (string-append awesome "/share/web/font-awesome/css/font-awesome.css")) - ; (("https://ajax.googleapis.com/ajax/libs/jquery/3.1.0/jquery.min.js") - ; (string-append jquery "/share/web/jquery/jquery.min.js")) - ; (("https://cdnjs.cloudflare.com/ajax/libs/lodash.js/4.17.10/lodash.js") - ; (string-append lodash js-path "lodash/lodash.js"))) - ;(substitute* '("sourcecodes/layout_svg_wt.php" - ; "sourcecodes/layout_svg_no.php") - ; (("http://d3js.org/d3.v4.min.js") - ; (string-append d3js js-path "d3js/d3.min.js")) - ; (("http://d3js.org/d3-selection-multi.v1.js") - ; (string-append d3js-multi js-path "d3js-multi/d3-selection-multi.js")) - ; (("https://cdn.rawgit.com/eligrey/canvas-toBlob.js/f1a01896135ab378aa5c0118eadd81da55e698d8/canvas-toBlob.js") - ; (string-append canvas-toblob js-path "canvas-toBlob/canvas-toBlob.js")) - ; (("https://cdn.rawgit.com/eligrey/FileSaver.js/e9d941381475b5df8b7d7691013401e171014e89/FileSaver.min.js") - ; (string-append filesaver js-path "filesaver/filesaver.js"))) - ; ) - ; #t)) + (add-after 'patch-source-shebangs 'replace-javascript + (lambda* (#:key inputs #:allow-other-keys) + (let ((jquery (assoc-ref inputs "jquery")) + (awesome (assoc-ref inputs "awesome")) + (cyto (assoc-ref inputs "cytoscape")) + (cyto2 (assoc-ref inputs "cytoscape-2")) + (cs-dagre (assoc-ref inputs "cyto-dagre")) + (d3js (assoc-ref inputs "d3js")) + (d3js-multi (assoc-ref inputs "d3js-multi")) + (dagre (assoc-ref inputs "dagre")) + (lodash (assoc-ref inputs "lodash")) + (canvas-toblob (assoc-ref inputs "canvas-toblob")) + (filesaver (assoc-ref inputs "filesaver")) + (panzoom (assoc-ref inputs "panzoom")) + (js-path "/share/genenetwork2/javascript/")) + (substitute* "sourcecodes/layout_cyto.php" + (("https://cdnjs.cloudflare.com/ajax/libs/cytoscape/3.7.1/cytoscape.min.js") + "/javascript/cytoscape.min.js") + (("https://cdnjs.cloudflare.com/ajax/libs/cytoscape/2.7.29/cytoscape.min.js") + "/javascript/cytoscape2.min.js") + (("http://spades.bioinf.spbau.ru/~alla/graph_viewer/js/cytoscape-dagre.js") + "/javascript/cytoscape-dagre.js") + (("https://unpkg.com/dagre@0.7.4/dist/dagre.js") + "/javascript/dagre.js") + (("https://cdnjs.cloudflare.com/ajax/libs/cytoscape-panzoom/2.5.3/cytoscape.js-panzoom.css") + "/javascript/cytoscape.js-panzoom.css") + (("https://cdnjs.cloudflare.com/ajax/libs/cytoscape-panzoom/2.5.3/cytoscape-panzoom.js") + "/javascript/cytoscape-panzoom.js") + (("https://cdnjs.cloudflare.com/ajax/libs/font-awesome/4.0.3/css/font-awesome.css") + "/javascript/font-awesome.css") + (("https://ajax.googleapis.com/ajax/libs/jquery/3.1.0/jquery.min.js") + "/javascript/jquery.min.js") + (("https://cdnjs.cloudflare.com/ajax/libs/lodash.js/4.17.10/lodash.js") + "/javascript/lodash.js")) + (substitute* '("sourcecodes/layout_svg_wt.php" + "sourcecodes/layout_svg_no.php") + (("http://d3js.org/d3.v4.min.js") + "/javascript/d3.min.js") + (("http://d3js.org/d3-selection-multi.v1.js") + "/javascript/d3-selection-multi.js") + (("https://cdn.rawgit.com/eligrey/canvas-toBlob.js/f1a01896135ab378aa5c0118eadd81da55e698d8/canvas-toBlob.js") + "/javascript/canvas-toBlob.js") + (("https://cdn.rawgit.com/eligrey/FileSaver.js/e9d941381475b5df8b7d7691013401e171014e89/FileSaver.min.js") + "/javascript/filesaver.js"))) + #t)) (replace 'install (lambda* (#:key outputs #:allow-other-keys) (let ((out (assoc-ref outputs "out"))) (copy-recursively "." out)) #t)) + (add-after 'install 'install-javascript-libraries + (lambda* (#:key inputs outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out")) + (jquery (assoc-ref inputs "jquery")) + (awesome (assoc-ref inputs "awesome")) + (cyto (assoc-ref inputs "cytoscape")) + (cyto2 (assoc-ref inputs "cytoscape-2")) + (cs-dagre (assoc-ref inputs "cyto-dagre")) + (d3js (assoc-ref inputs "d3js")) + (d3js-multi (assoc-ref inputs "d3js-multi")) + (dagre (assoc-ref inputs "dagre")) + (lodash (assoc-ref inputs "lodash")) + (canvas-toblob (assoc-ref inputs "canvas-toblob")) + (filesaver (assoc-ref inputs "filesaver")) + (panzoom (assoc-ref inputs "panzoom")) + (js-path "/share/genenetwork/javascript/") + (js-path2 "/share/genenetwork2/javascript/")) + (mkdir-p (string-append out "/javascript")) + (symlink (string-append (string-append cyto2 js-path2 "cytoscape/cytoscape.min.js")) + (string-append out "/javascript/cytoscape.min.js")) + (symlink (string-append (string-append cyto js-path2 "cytoscape/cytoscape.min.js")) + (string-append out "/javascript/cytoscape2.min.js")) + (symlink (string-append cs-dagre js-path2 "cytoscape-dagre/cytoscape-dagre.js") + (string-append out "/javascript/cytoscape-dagre.js")) + (symlink (string-append dagre js-path2 "dagre/dagre.js") + (string-append out "/javascript/dagre.js")) + (symlink (string-append panzoom js-path2 "cytoscape-panzoom/cytoscape.js-panzoom.css") + (string-append out "/javascript/cytoscape.js-panzoom.css")) + (symlink (string-append panzoom js-path2 "cytoscape-panzoom/cytoscape-panzoom.js") + (string-append out "/javascript/cytoscape-panzoom.js")) + (symlink (string-append awesome "/share/web/font-awesomecss/font-awesome.css") + (string-append out "/javascript/font-awesome.css")) + (symlink (string-append jquery "/share/web/jquery/jquery.min.js") + (string-append out "/javascript/jquery.min.js")) + (symlink (string-append lodash js-path2 "lodash/lodash.js") + (string-append out "/javascript/lodash.js")) + (symlink (string-append d3js js-path "d3js/d3.min.js") + (string-append out "/javascript/d3.min.js")) + (symlink (string-append d3js-multi js-path "d3js-multi/d3-selection-multi.js") + (string-append out "/javascript/d3-selection-multi.js")) + (symlink (string-append canvas-toblob js-path "canvas-toblob/canvas-toBlob.js") + (string-append out "/javascript/canvas-toBlob.js")) + (symlink (string-append filesaver js-path2 "filesaver/FileSaver.js") + (string-append out "/javascript/filesaver.js")) + #t))) (add-after 'install 'make-files-executable (lambda* (#:key outputs #:allow-other-keys) (let ((out (assoc-ref outputs "out"))) |