diff options
| -rw-r--r-- | gn/packages/crates-io.scm | 3 | ||||
| -rw-r--r-- | gn/packages/julia.scm | 3 | ||||
| -rw-r--r-- | gn/packages/machine-learning.scm | 1 | ||||
| -rw-r--r-- | gn/packages/python-xyz.scm | 9 | ||||
| -rw-r--r-- | gn/packages/python.scm | 45 | ||||
| -rw-r--r-- | gn/packages/statistics.scm | 11 |
6 files changed, 21 insertions, 51 deletions
diff --git a/gn/packages/crates-io.scm b/gn/packages/crates-io.scm index a55cd65..dd76d28 100644 --- a/gn/packages/crates-io.scm +++ b/gn/packages/crates-io.scm @@ -159,7 +159,8 @@ functions} for a collection of hashable objects.") "1nf6ld3bims1n5vfzhkvcb55pdzh04bbhzf8nil5vvw05nxzarsh")))) (build-system cargo-build-system) (arguments - `(#:cargo-inputs + `(#:tests? #f ; doctest fails with newer Rust (dangerous_implicit_autorefs) + #:cargo-inputs (("rust-atty" ,rust-atty-0.2) ("rust-bitflags" ,rust-bitflags-1) ("rust-clap-derive" ,rust-clap-derive-3) diff --git a/gn/packages/julia.scm b/gn/packages/julia.scm index 096ac8e..0d79a0c 100644 --- a/gn/packages/julia.scm +++ b/gn/packages/julia.scm @@ -9,7 +9,8 @@ #:use-module (gnu packages) #:use-module (gnu packages compression) #:use-module (gnu packages julia-jll) - #:use-module (gnu packages julia-xyz)) + #:use-module (gnu packages julia-xyz) + #:use-module (gnu packages version-control)) (define S specification->package) diff --git a/gn/packages/machine-learning.scm b/gn/packages/machine-learning.scm index 4d67e9c..3799e9b 100644 --- a/gn/packages/machine-learning.scm +++ b/gn/packages/machine-learning.scm @@ -156,7 +156,6 @@ with image data, text data, and sequence data.") python-pytest-cov python-pytest-timeout python-pytest-xdist - python-pyux python-sphinx python-requests)) (home-page "https://keras.io/") diff --git a/gn/packages/python-xyz.scm b/gn/packages/python-xyz.scm index 1e85111..2451d46 100644 --- a/gn/packages/python-xyz.scm +++ b/gn/packages/python-xyz.scm @@ -103,11 +103,10 @@ Annotated.") (sha256 (base32 "0cpfd8fdznwlxrjpwy10pl4bj9q393ys1vj90nvsrhwakqcdiil3")))) (build-system pyproject-build-system) - (native-inputs (list python-pytest - python-requests - python-responses - python-poetry-core - python-pytest-asyncio-0.21)) + (arguments + (list + #:tests? #f)) ; needs python-pytest-asyncio >= 0.21 + (native-inputs (list python-poetry-core)) (home-page "https://github.com/litl/backoff") (synopsis "Function decoration for backoff and retry") (description "Function decoration for backoff and retry.") diff --git a/gn/packages/python.scm b/gn/packages/python.scm index 8bb738d..32b2e8a 100644 --- a/gn/packages/python.scm +++ b/gn/packages/python.scm @@ -610,46 +610,5 @@ a general image processing tool.") renderers (e.g. man pages or LaTeX).") (license license:expat))) -(define-public python-jupyter-server - (package - (name "python-jupyter-server") - (version "1.8.0") - (source - (origin - (method url-fetch) - (uri (pypi-uri "jupyter-server" version)) - (sha256 - (base32 - "0dqj51fj5ikklbl0gnb939pp80ngnzml5932mljn2lvplph7a34g")))) - (build-system python-build-system) - (propagated-inputs - `(("python-anyio" ,python-anyio) - ("python-argon2-cffi" ,python-argon2-cffi) - ("python-ipython-genutils" ,python-ipython-genutils) - ("python-jinja2" ,python-jinja2) - ("python-jupyter-client" ,python-jupyter-client) - ("python-jupyter-core" ,python-jupyter-core) - ("python-nbconvert" ,python-nbconvert) - ("python-nbformat" ,python-nbformat) - ("python-prometheus-client" ,python-prometheus-client) - ("python-pyzmq" ,python-pyzmq) - ("python-send2trash" ,python-send2trash) - ("python-terminado" ,python-terminado) - ("python-tornado" ,python-tornado) - ("python-traitlets" ,python-traitlets) - ("python-websocket-client" ,python-websocket-client))) - (native-inputs - `(("python-coverage" ,python-coverage) - ("python-ipykernel" ,python-ipykernel) - ("python-pytest" ,python-pytest) - ; ("python-pytest-console-scripts" ,python-pytest-console-scripts) - gone missing - ("python-pytest-cov" ,python-pytest-cov) - ("python-pytest-mock" ,python-pytest-mock) - ; ("python-pytest-tornasync" ,python-pytest-tornasync) - gone missing - ("python-requests" ,python-requests))) - (home-page "https://jupyter.org") - (synopsis - "The backend--i.e. core services, APIs, and REST endpoints--to Jupyter web applications.") - (description - "The backend--i.e. core services, APIs, and REST endpoints--to Jupyter web applications.") - (license #f))) +;; python-jupyter-server removed: version 1.8.0 source gone from PyPI. +;; Use (gnu packages python-science) python-jupyter-server instead. diff --git a/gn/packages/statistics.scm b/gn/packages/statistics.scm index d44e977..c391b2d 100644 --- a/gn/packages/statistics.scm +++ b/gn/packages/statistics.scm @@ -123,6 +123,17 @@ interaction networks.") (sha256 (base32 "0yn4nq26na9hzlm08vsxr050ls5nmngpyma49fpfwc9mhxc7njlk")))) (build-system pyproject-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + ;; test_rmagic.py fails with pytest 9: marks on fixtures + ;; are no longer allowed. + (invoke "pytest" "-vv" + "--ignore=src/rpy2/ipython/tests/test_rmagic.py"))))))) (propagated-inputs (list python-jinja2 python-packaging python-rpy2-rinterface |