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1 files changed, 21 insertions, 0 deletions

diff --git a/scripts/create-singularity-pangenome-tools.sh b/scripts/create-singularity-pangenome-tools.sh
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+++ b/scripts/create-singularity-pangenome-tools.sh
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+#!/bin/sh
+# Build a Singularity (SquashFS) image of mempang-workshop plus a
+# minimal shell environment, and drop a copy in ~/tmp.  See
+# lib-pangenome-pack.sh for the naming convention and outputs.
+#
+# Usage: scripts/create-singularity-pangenome-tools.sh
+
+. "$(dirname "$0")/lib-pangenome-pack.sh"
+
+pangenome_pack squashfs gz.squashfs singularity
+pangenome_write_outputs
+
+echo
+echo "Singularity image ready:"
+ls -lh "$PACK_TARGET"
+echo "md5sum:    $MD5SUM_FILE"
+echo "inventory: $INVENTORY"
+echo
+echo "Run with:"
+echo "  singularity exec $PACK_TARGET <command>"
+echo "  singularity shell $PACK_TARGET"