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| author | pjotrp | 2026-03-21 10:00:21 +0100 |
|---|---|---|
| committer | pjotrp | 2026-03-21 10:00:25 +0100 |
| commit | f6be6750ef2847bacbf483f7acc0a1ec3c5e896b (patch) | |
| tree | fbba026114eddf15c5cda4f5e7c0d2c43e01348f /gn | |
| parent | fc0ab806dcbdc6e66ff34c9194aba0ea303c4257 (diff) | |
| download | guix-bioinformatics-f6be6750ef2847bacbf483f7acc0a1ec3c5e896b.tar.gz | |
Fix (vcflib) upgrade to latest 1.0.15
Includes vcflib CMake patch that will be merged upstream.
Diffstat (limited to 'gn')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 12 |
1 files changed, 7 insertions, 5 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index 7a7d0de..a1de4b2 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -2358,16 +2358,18 @@ sequences to accelerate the alignment process.") (uri (git-reference (url "https://github.com/vcflib/vcflib") (commit (string-append "v" version)) - (recursive? #t))) ; some sources are included in the build + (recursive? #t))) (file-name (git-file-name name version)) (sha256 (base32 - "0chpjd3g70jc0kwpf141z7rgm9i8pd8xxr1bfywyn15zfry774xa")))) + "04gwnwvr10z6kc0f4n25a5dhw4jl4i2mqfxyy1kxmqbl1dw1b20k")) + (patches + (list (search-patch "vcflib-use-system-fastahack-smithwaterman.patch"))))) (build-system cmake-build-system) (inputs (list - fastahack - htslib + fastahack + htslib pandoc ; for man pages perl python @@ -2381,7 +2383,7 @@ sequences to accelerate the alignment process.") xz zig-0.15)) ; older versions of zig will not work (native-inputs - `(("pkg-config" ,pkg-config))) + (list pkg-config)) (home-page "https://github.com/vcflib/vcflib/") (synopsis "Library for parsing and manipulating VCF files") (description "Vcflib provides methods to manipulate and interpret |