Delete Packages: Move packages to another repository HEAD master

Move the dependencies for the `aider` tool out to a separate
repository, specifically https://git.genenetwork.org/ai-tools/ since
they are not directly related to guix-bioinformatics. Work on defining
`aider` and its dependencies will continue in that other repository.

2 files changed, 0 insertions, 204 deletions

diff --git a/gn/packages/python-build.scm b/gn/packages/python-build.scm
deleted file mode 100644
index 445a674..0000000
--- a/gn/packages/python-build.scm
+++ /dev/null
@@ -1,68 +0,0 @@
-(define-module (gn packages python-build)
- #:use-module (guix gexp)
- #:use-module (guix packages)
- #:use-module (guix git-download)
- #:use-module (guix build-system python)
- #:use-module (guix build-system pyproject)
- #:use-module ((guix licenses) #:prefix license:)
-
- #:use-module (gnu packages check)
- #:use-module (gnu packages rust-apps)
- #:use-module (gnu packages python-xyz)
- #:use-module (gnu packages python-check)
- #:use-module (gnu packages python-build))
-
-(define-public python-build
-  (package
-    (name "python-build")
-    (version "1.4.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/pypa/build")
-              (commit version)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "107hhzjrlj56gshcyalf4laf741swmmaznlz0xcfv8rvpwa81mm2"))))
-    (build-system pyproject-build-system)
-    (native-inputs
-     (list uv
-           python-tox
-           python-pip
-           python-wheel
-           python-tomli
-           python-pytest
-           python-filelock
-           python-colorama
-           python-flit-core
-           python-packaging
-           python-pytest-cov
-           python-setuptools
-           python-virtualenv
-           python-pytest-mock
-           python-pytest-xdist
-           python-pyproject-hooks
-           python-importlib-metadata
-           python-pytest-rerunfailures))
-    (arguments
-     (list #:phases
-           #~(modify-phases %standard-phases
-               (add-before 'build 'set-env
-                 (lambda _
-                   ;; When running tests, things fail because HOME=/homeless-shelter.
-                   (setenv "HOME" "/tmp")))
-               (add-before 'check 'patch-tests
-                 (lambda* (#:key inputs #:allow-other-keys)
-                   (substitute* "tests/test_env.py"
-	             ((", path=sysconfig.get_path\\(\"scripts\"\\)") "")))))
-
-           ;; Cheat by deactivating tests for now.
-           #:tests? #f))
-    (home-page "https://build.pypa.io/")
-    (synopsis "A simple, correct Python packaging build frontend")
-    (description "A simple, correct Python packaging build frontend.
- build manages pyproject.toml-based builds, invoking build-backend hooks as
- appropriate to build a distribution package. It is a simple build tool and does
- not perform any dependency management.")
-    (license license:expat)))
diff --git a/gn/packages/python-xyz.scm b/gn/packages/python-xyz.scm
deleted file mode 100644
index 1e85111..0000000
--- a/gn/packages/python-xyz.scm
+++ /dev/null
@@ -1,136 +0,0 @@
-(define-module (gn packages python-xyz)
-  #:use-module (guix packages)
-  #:use-module (guix download)
-  #:use-module (guix git-download)
-  #:use-module (guix build-system python)
-  #:use-module (guix build-system pyproject)
-  #:use-module ((guix licenses) #:prefix license:)
-
-  #:use-module (gnu packages check)
-  #:use-module (gnu packages sphinx)
-  #:use-module (gnu packages python-web)
-  #:use-module (gnu packages python-xyz)
-  #:use-module (gnu packages python-check)
-  #:use-module (gnu packages python-build))
-
-(define-public python-mslex
-  (package
-    (name "python-mslex")
-    (version "1.3.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/smoofra/mslex")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1k7p2yzsiga39kmcp440mgxlgsahg01il7jrbr8mc94k60wzmgdy"))))
-    (build-system pyproject-build-system)
-    (native-inputs (list python-setuptools python-wheel))
-    (inputs (list python-tox
-                  python-trio
-                  python-tqdm
-                  python-twine
-                  python-black
-                  python-flake8
-                  python-sphinx
-                  python-pytest
-                  python-watchdog
-                  python-coverage
-                  python-bump2version
-                  python-types-setuptools))
-    (home-page "https://github.com/smoofra/mslex")
-    (synopsis "shlex for windows")
-    (description "shlex for windows.")
-    (license license:asl2.0)))
-
-
-(define-public python-oslex
-  (package
-    (name "python-oslex")
-    (version "0.1.3")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (pypi-uri "oslex" version))
-       (sha256
-        (base32 "0bazd0vk2lzsk7cwgl2m669m6dqqhh4l0d6sn2yaiwjxqy1cvm0y"))))
-    (build-system pyproject-build-system)
-    (propagated-inputs (list python-mslex))
-    (native-inputs (list python-hatchling))
-    (home-page "https://github.com/petamas/oslex")
-    (synopsis "OS-independent wrapper for shlex and mslex")
-    (description "OS-independent wrapper for shlex and mslex.")
-    (license license:expat)))
-
-
-(define-public python-annotated-doc
-  (package
-    (name "python-annotated-doc")
-    (version "0.0.4")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/fastapi/annotated-doc")
-             (commit version)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "13fh58q1a8kvrx1kjgr6qmd09jhikxc7wlyccajpfz657ipjif9v"))))
-    (build-system pyproject-build-system)
-    (native-inputs (list python-pdm-backend))
-    (home-page "https://github.com/fastapi/annotated-doc")
-    (synopsis
-     "Document parameters, class attributes, return types, and variables inline, with Annotated.")
-    (description
-     "Document parameters, class attributes, return types, and variables inline, with
-Annotated.")
-    (license license:expat)))
-
-
-(define-public python-backoff
-  (package
-    (name "python-backoff")
-    (version "2.2.1")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/litl/backoff")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0cpfd8fdznwlxrjpwy10pl4bj9q393ys1vj90nvsrhwakqcdiil3"))))
-    (build-system pyproject-build-system)
-    (native-inputs (list python-pytest
-                         python-requests
-                         python-responses
-                         python-poetry-core
-                         python-pytest-asyncio-0.21))
-    (home-page "https://github.com/litl/backoff")
-    (synopsis "Function decoration for backoff and retry")
-    (description "Function decoration for backoff and retry.")
-    (license license:expat)))
-
-
-(define-public python-typing-inspection
-  (package
-    (name "python-typing-inspection")
-    (version "0.4.2")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/pydantic/typing-inspection")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1dqib4arxxaxwyapw6y4pcvm38l8djkhd8cfr149w42bw4xrqr38"))))
-    (build-system pyproject-build-system)
-    (propagated-inputs (list python-typing-extensions))
-    (native-inputs (list python-hatchling))
-    (home-page "https://github.com/pydantic/typing-inspection")
-    (synopsis "Runtime typing introspection tools")
-    (description "Runtime typing introspection tools.")
-    (license license:expat)))