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authorEfraim Flashner2021-09-17 12:27:01 +0300
committerEfraim Flashner2021-09-17 12:27:01 +0300
commit5f66ae588b856088ed82395b90de4a67140b0b63 (patch)
treeefe9d182b9572f4d87d014fb0612bb9eafad4a89 /gn
parent0684b02dacdd6fcbb84629474744b94554b4305c (diff)
downloadguix-bioinformatics-5f66ae588b856088ed82395b90de4a67140b0b63.tar.gz
gn: julia packaging updates, for upstreaming
Diffstat (limited to 'gn')
-rw-r--r--gn/packages/julia.scm33
1 files changed, 21 insertions, 12 deletions
diff --git a/gn/packages/julia.scm b/gn/packages/julia.scm
index dc904ee..8042fac 100644
--- a/gn/packages/julia.scm
+++ b/gn/packages/julia.scm
@@ -152,6 +152,8 @@ times faster than a R/qtl linear model genome scan using 16 threads.")
(build-system julia-build-system)
(arguments
`(#:tests? #f)) ; Test suite needs a copy of the Julia package repository.
+ (native-inputs
+ `(("julia-example" ,julia-example)))
(home-page "https://github.com/JuliaLang/PackageCompiler.jl")
(synopsis "Compile your Julia Package")
(description "PackageCompiler is a Julia package with two main purposes:
@@ -437,9 +439,9 @@ properties
@end enumerate")
(license license:expat)))
-;; TODO: Unbundle extra assets? assets/html/
-;; see also: js inputs: src/Writers/HTMLWriter.jl
-;; latex inputs: src/Writers/LaTeXWriter.jl
+;; ready to upstream!
+;; By removing all the javascript and css downloads any HTML documentation
+;; produced by this package will not be very useful.
(define-public julia-documenter
(package
(name "julia-documenter")
@@ -461,19 +463,25 @@ properties
(lambda* (#:key inputs #:allow-other-keys)
(substitute* "src/Deps.jl"
(("pip install")
- (string-append (assoc-ref inputs "python") "/bin/pip install")))
+ (string-append (assoc-ref inputs "python")
+ "/bin/pip install")))
#t))
- )
- ))
+ (add-after 'unpack 'remove-javascript-downloads
+ (lambda _
+ (substitute* "src/Writers/HTMLWriter.jl"
+ (("cdnjs.cloudflare.com") "example.com"))
+ ;; Removing the javascript downloads causes these tests fail.
+ (substitute* "test/examples/tests.jl"
+ ((".*Main\\.examples_html_doc.*") "")
+ ((".*Main\\.examples_html_mathjax3_doc.*") ""))
+ #t)))))
(propagated-inputs
`(("julia-ansicoloredprinters" ,julia-ansicoloredprinters)
("julia-docstringextensions" ,julia-docstringextensions)
("julia-iocapture" ,julia-iocapture)
("julia-json" ,julia-json)))
(inputs
- `(
- ("python" ,python-wrapper)
- ))
+ `(("python" ,python-wrapper)))
(native-inputs
`(("git" ,(S "git-minimal"))
("julia-documentermarkdown" ,julia-documentermarkdown)
@@ -510,11 +518,12 @@ properties
(substitute* '("assets/html/documenter.js"
"assets/html/search.js"
"src/Writers/HTMLWriter.jl")
- (("https.*(min|css|js)$") ""))
+ (("cdnjs.cloudflare.com") "example.com"))
#t)))))
(propagated-inputs
`(("julia-docstringextensions" ,julia-docstringextensions)
("julia-json" ,julia-json)))
+ (inputs `())
(native-inputs `())
(properties '((hidden? . #t)))))
@@ -657,8 +666,8 @@ ANSI escape codes to another format.")
`(("julia-jllwrappers" ,julia-jllwrappers)))
(home-page "https://github.com/JuliaBinaryWrappers/libsass_jll.jl")
(synopsis "Julia wrapper for libsass")
- (description "This package provides a wrapper for libsass It is an
-autogenerated source package constructed using @code{BinaryBuilder.jl}. The
+ (description "This package provides a wrapper for libsass. It is an
+autogenerated source package constructed using @code{BinaryBuilder.jl}. The
originating @code{build_tarballs.jl} script can be found on the community
build tree Yggdrasil.")
(license license:expat))))