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| author | Efraim Flashner | 2021-11-16 20:52:57 +0200 |
|---|---|---|
| committer | Efraim Flashner | 2021-11-16 20:52:57 +0200 |
| commit | 4d4a054ea1d191c561c9de171a789c5db939fd1d (patch) | |
| tree | 91e5f2a14c5fc6bbb1ab35c42d2a0411c7d4d4c4 /gn | |
| parent | af6f5ea38d4871f22096adfe862b0f52563f47fa (diff) | |
| download | guix-bioinformatics-4d4a054ea1d191c561c9de171a789c5db939fd1d.tar.gz | |
gn: metaeuk: enable tests.
Diffstat (limited to 'gn')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 10 |
1 files changed, 8 insertions, 2 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index dc1ff65..8d4edaa 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -2476,7 +2476,6 @@ of similar contiguity and accuracy to other de Bruijn assemblers (e.g. Velvet)." (arguments `(#:configure-flags '("-DUSE_SYSTEM_ZSTD=YES") #:substitutable? #f ; We want the native build. - #:tests? #f ; TODO #:phases (modify-phases %standard-phases (add-after 'unpack 'use-shared-libraries @@ -2490,13 +2489,20 @@ of similar contiguity and accuracy to other de Bruijn assemblers (e.g. Velvet)." (string-append (assoc-ref inputs "xxhash") "/include")) (("lib/simde") (string-append (assoc-ref inputs "simde") "/include/simde"))) - #t))))) + #t)) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (with-directory-excursion + (string-append "../" ,name "-" ,version "-checkout/tests") + (invoke "./run.sh" "../../build/src/metaeuk")))))))) (inputs `(("bzip2" ,bzip2) ("zlib" ,zlib) ("zstd:lib" ,zstd "lib"))) (native-inputs `(;("gzstream" ,gzstream) + ("perl" ,perl) ("simde" ,simde) ("xxd" ,xxd) ("xxhash" ,xxhash))) |