aboutsummaryrefslogtreecommitdiff
path: root/gn/packages
diff options
context:
space:
mode:
authorEfraim Flashner2022-09-24 19:53:26 +0300
committerEfraim Flashner2022-09-24 19:53:26 +0300
commitac5eef9bfb431fac6fdfc60dd06ef44607787b76 (patch)
tree93d5ac73df86ab623b7f393c4ae4820716e98ce4 /gn/packages
parentee15e19b68607d6b715ee5a0afec284812047f5b (diff)
downloadguix-bioinformatics-ac5eef9bfb431fac6fdfc60dd06ef44607787b76.tar.gz
gn: Update blobtools.
Diffstat (limited to 'gn/packages')
-rw-r--r--gn/packages/bioinformatics.scm20
1 files changed, 4 insertions, 16 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index 4ed6b54..2d1b55f 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -3430,8 +3430,8 @@ extension for metagenomic datasets, QUAST-LG, the extension for large genomes
"http://topaz.gatech.edu/GeneMark/license_download.cgi")))))
(define-public blobtools
- (let ((commit "6ed1ccf06617a0997f99cc2b28ffc82766c9a763")
- (revision "2")) ;; 2022-10-02
+ (let ((commit "1bed7870198831539b370f9254d5d30b94199a18")
+ (revision "3")) ;; 2022-09-21
(package
(name "blobtools")
(version (git-version "1.1.1" revision commit))
@@ -3443,22 +3443,10 @@ extension for metagenomic datasets, QUAST-LG, the extension for large genomes
(commit commit)))
(file-name (git-file-name name version))
(sha256
- (base32 "03a8n0s8qq6il5650basz4mlfp25743ii239jd0xsiirk5mmr8h7"))
- (patches (search-patches "blobtools-setup-py.patch"))
- ))
+ (base32 "0nki2m1sxkx75rkwzw6dqvxzyswrv47q0rz4bx9w0bz4fawnx86z"))))
(build-system python-build-system)
(arguments
- (list #:tests? #f ; No tests in repo.
- #:phases
- #~(modify-phases %standard-phases
- (add-after 'unpack 'fix-setup.py
- (lambda _
- (substitute* "setup.py"
- (("^reqs = .*")
- (string-append "with open ('requirements.txt') as f:\n"
- " reqs = f.read().splitlines()\n"))
- (("cmdclass.*")
- "entry_points={'console_scripts': [\"blobtools=lib.interface:main\"]},\n")))))))
+ (list #:tests? #f)) ; No tests in repo.
(inputs
(list python-docopt
python-matplotlib