aboutsummaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorFrederick Muriuki Muriithi2023-10-27 09:45:27 +0300
committerFrederick Muriuki Muriithi2023-10-27 09:47:50 +0300
commitd55876c9480b058541c586e5cf29064ae5e0dfef (patch)
tree3af86078aeb3e320c9849964d81af69ec154bce0
parent53d19fd513a98d6215fd41e368559162721e9802 (diff)
downloadguix-bioinformatics-d55876c9480b058541c586e5cf29064ae5e0dfef.tar.gz
Update dependencies: genenetwork3 and gn-auth
* genenetwork3: Remove `yoyo-migrations` as a dependency * gn-auth: Use the upstream `yoyo-migrations` * Remove temporary local definition for yoyo-migrations.
-rw-r--r--gn/packages/genenetwork.scm5
-rw-r--r--gn/packages/python.scm20
2 files changed, 2 insertions, 23 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index ac26fd0..4fb8908 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -170,8 +170,7 @@
("r-wgcna" ,r-wgcna)
("r-ctl" ,r-ctl)
("rust-qtlreaper" ,rust-qtlreaper)
- ("diffutils" ,diffutils)
- ("yoyo-migrations" ,yoyo-migrations-8.2.0)))
+ ("diffutils" ,diffutils)))
(build-system python-build-system)
(arguments
(list #:phases
@@ -503,7 +502,7 @@
("python-redis" ,python-redis)
("python-authlib" ,python-authlib)
("python-pymonad" ,python-pymonad)
- ("yoyo-migrations" ,yoyo-migrations-8.2.0)
+ ("yoyo-migrations" ,yoyo-migrations)
("python-bcrypt" ,python-bcrypt) ;; remove after removing all references
("python-mysqlclient" ,python-mysqlclient)
("python-argon2-cffi" ,python-argon2-cffi)
diff --git a/gn/packages/python.scm b/gn/packages/python.scm
index c23d894..db2f4c9 100644
--- a/gn/packages/python.scm
+++ b/gn/packages/python.scm
@@ -1836,23 +1836,3 @@ complete wrapping of the HDF5 API, while the high-level component supports
access to HDF5 files, datasets and groups using established Python and NumPy
concepts.")
(license license:bsd-3)))
-
-(define-public yoyo-migrations-8.2.0
- (package
- (inherit yoyo-migrations)
- (name "yoyo-migrations")
- (version "8.2.0")
- (source
- (origin
- ;; We use the upstream repository, as the tests are not included in the
- ;; PyPI releases.
- (method hg-fetch)
- (uri (hg-reference
- (url "https://hg.sr.ht/~olly/yoyo")
- (changeset (string-append "v" version "-release"))))
- (file-name (string-append name "-" version "-checkout"))
- (sha256
- (base32 "1al030ix0w63hr4s3mqry6s0mlqdj8p242pdqks06br7c25nx3yj"))))
- (propagated-inputs
- (modify-inputs (package-propagated-inputs yoyo-migrations)
- (append python-importlib-metadata)))))