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| author | Frederick Muriuki Muriithi | 2023-10-27 09:45:27 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2023-10-27 09:47:50 +0300 |
| commit | d55876c9480b058541c586e5cf29064ae5e0dfef (patch) | |
| tree | 3af86078aeb3e320c9849964d81af69ec154bce0 | |
| parent | 53d19fd513a98d6215fd41e368559162721e9802 (diff) | |
| download | guix-bioinformatics-d55876c9480b058541c586e5cf29064ae5e0dfef.tar.gz | |
Update dependencies: genenetwork3 and gn-auth
* genenetwork3: Remove `yoyo-migrations` as a dependency
* gn-auth: Use the upstream `yoyo-migrations`
* Remove temporary local definition for yoyo-migrations.
| -rw-r--r-- | gn/packages/genenetwork.scm | 5 | ||||
| -rw-r--r-- | gn/packages/python.scm | 20 |
2 files changed, 2 insertions, 23 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index ac26fd0..4fb8908 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -170,8 +170,7 @@ ("r-wgcna" ,r-wgcna) ("r-ctl" ,r-ctl) ("rust-qtlreaper" ,rust-qtlreaper) - ("diffutils" ,diffutils) - ("yoyo-migrations" ,yoyo-migrations-8.2.0))) + ("diffutils" ,diffutils))) (build-system python-build-system) (arguments (list #:phases @@ -503,7 +502,7 @@ ("python-redis" ,python-redis) ("python-authlib" ,python-authlib) ("python-pymonad" ,python-pymonad) - ("yoyo-migrations" ,yoyo-migrations-8.2.0) + ("yoyo-migrations" ,yoyo-migrations) ("python-bcrypt" ,python-bcrypt) ;; remove after removing all references ("python-mysqlclient" ,python-mysqlclient) ("python-argon2-cffi" ,python-argon2-cffi) diff --git a/gn/packages/python.scm b/gn/packages/python.scm index c23d894..db2f4c9 100644 --- a/gn/packages/python.scm +++ b/gn/packages/python.scm @@ -1836,23 +1836,3 @@ complete wrapping of the HDF5 API, while the high-level component supports access to HDF5 files, datasets and groups using established Python and NumPy concepts.") (license license:bsd-3))) - -(define-public yoyo-migrations-8.2.0 - (package - (inherit yoyo-migrations) - (name "yoyo-migrations") - (version "8.2.0") - (source - (origin - ;; We use the upstream repository, as the tests are not included in the - ;; PyPI releases. - (method hg-fetch) - (uri (hg-reference - (url "https://hg.sr.ht/~olly/yoyo") - (changeset (string-append "v" version "-release")))) - (file-name (string-append name "-" version "-checkout")) - (sha256 - (base32 "1al030ix0w63hr4s3mqry6s0mlqdj8p242pdqks06br7c25nx3yj")))) - (propagated-inputs - (modify-inputs (package-propagated-inputs yoyo-migrations) - (append python-importlib-metadata))))) |