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authorPjotr Prins2022-01-01 14:31:18 +0000
committerPjotr Prins2022-01-01 14:31:18 +0000
commita1c6e8353c13a5ccd6bbfa1e9dd8eb53175ce22b (patch)
tree0aa92b6b208e498c62f67808c9b5cd9dfbb5b479
parentaf61d6381abf4129ad986f74e3348c3381f9f2d7 (diff)
downloadguix-bioinformatics-a1c6e8353c13a5ccd6bbfa1e9dd8eb53175ce22b.tar.gz
genenetwork2: put a hack in to fix failing build. Please amend
-rw-r--r--gn/packages/genenetwork.scm18
1 files changed, 12 insertions, 6 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index e2f2b7b..ca13aa9 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -121,7 +121,7 @@
("python-bcrypt" ,python-bcrypt)
("python-flask" ,python-flask)
("python-flask-cors" ,python-flask-cors)
- ("python-flask-socketio" ,python-flask-socketio)
+ ;; ("python-flask-socketio" ,python-flask-socketio)
("python-ipfshttpclient" ,python-ipfshttpclient)
("python-mypy" ,python-mypy)
("python-mypy-extensions" ,python-mypy-extensions)
@@ -256,9 +256,9 @@
("javascript-zxcvbn" ,javascript-zxcvbn)
("javascript-jquery-ui" ,javascript-jquery-ui)
("javascript-jquery-cookie" ,javascript-jquery-cookie)
- ("javascript-xterm" ,javascript-xterm)
- ("javascript-xterm-style" ,javascript-xterm-style)
- ("javascript-xterm-addon-fit",javascript-xterm-addon-fit)
+ ("javascript-xterm" ,javascript-xterm)
+ ("javascript-xterm-style" ,javascript-xterm-style)
+ ("javascript-xterm-addon-fit",javascript-xterm-addon-fit)
("javascript-font-awesome" ,javascript-font-awesome)))
(inputs
`(("javascript-colorbox" ,(package-source javascript-colorbox))))
@@ -268,6 +268,8 @@
#:phases
(modify-phases %standard-phases
(delete 'reset-gzip-timestamps)
+ (replace 'install
+ (lambda _ #t))
(add-after 'unpack 'fix-paths-scripts
(lambda _
(substitute* "bin/genenetwork2"
@@ -379,6 +381,7 @@
; (install-file (string-append %genenetwork-graph "/dependency-graph.html") output-dir)
; #t)))
+ #!
(add-after 'install 'generate-dependency-file
(lambda* (#:key inputs outputs #:allow-other-keys)
(call-with-output-file
@@ -387,7 +390,8 @@
"/lib/python"
(python-version (assoc-ref inputs "python"))
"/site-packages"
- "/wqflask/DEPENDENCIES.md")
+ "/wqflask/DEPENDENCIES.md"
+ )
(lambda (port)
(format
port "
@@ -416,7 +420,9 @@
"| **[" name "](" home-page ")** v"
version"| "
description " |\n")))
- (package-propagated-inputs this-package)))))))))))
+ (package-propagated-inputs this-package))))))))
+ !#
+ )))
(home-page "http://genenetwork.org/")
(synopsis "Full genenetwork services")
(description "Genenetwork installation sumo.")