aboutsummaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorEfraim Flashner2023-09-24 15:52:41 +0300
committerEfraim Flashner2023-09-24 15:52:41 +0300
commit98eb79fc72ab4b6620eb13b7c021ce4975bc2a71 (patch)
tree507f56effad3578de70947829fead8f15643146e
parentbc0bc49230c7bfbf2343301345da79a04bff43c9 (diff)
downloadguix-bioinformatics-98eb79fc72ab4b6620eb13b7c021ce4975bc2a71.tar.gz
pggb: Fix typo.
-rw-r--r--gn/packages/bioinformatics.scm8
1 files changed, 5 insertions, 3 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index 1fb8844..89766bb 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -2561,7 +2561,9 @@ multiple sequence alignment.")
(wrap-script file
`("PATH" ":" prefix
,(map (lambda (input) (string-append input "/bin"))
- '#$(map (lambda (label) (this-package-input label))
+ '#$(map (lambda (label)
+ (or (this-package-input (string-append label "-hwcaps"))
+ (this-package-input label)))
(list "bcftools"
"bedtools"
"gfaffix"
@@ -2569,7 +2571,7 @@ multiple sequence alignment.")
"fastix"
"multiqc"
"mummer"
- "odgi-hwcaps"
+ "odgi"
"pafplot"
"parallel"
"pigz"
@@ -2581,7 +2583,7 @@ multiple sequence alignment.")
"vcfbub"
"vcflib"
"vg"
- "wfmash-hwcaps"))))))
+ "wfmash"))))))
(list (string-append out "/bin/pggb")
(string-append out "/bin/partition-before-pggb")
(string-append out "/bin/gfa2evaluation.sh")