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author | Munyoki Kilyungi | 2024-12-17 18:08:09 +0300 |
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committer | Munyoki Kilyungi | 2024-12-17 18:09:00 +0300 |
commit | 823014e2d05920caaec1487c42d6c8a795724b7d (patch) | |
tree | a74886faeea4b9c42377eb021ec0e330f54f58ea | |
parent | ed658666041947ad1bc04590949e9e25b57cf8c8 (diff) | |
download | guix-bioinformatics-823014e2d05920caaec1487c42d6c8a795724b7d.tar.gz |
Update gn-guile script.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
-rw-r--r-- | gn/packages/guile.scm | 92 |
1 files changed, 71 insertions, 21 deletions
diff --git a/gn/packages/guile.scm b/gn/packages/guile.scm index 824350c..3396d8d 100644 --- a/gn/packages/guile.scm +++ b/gn/packages/guile.scm @@ -6,6 +6,7 @@ #:use-module (guix build-system guile) #:use-module (guix build-system gnu) #:use-module ((gnu packages autotools) #:select (libltdl autoconf automake libtool)) + #:use-module ((gnu packages bash) #:select (bash-minimal)) #:use-module ((gnu packages databases) #:select (mariadb)) #:use-module ((gnu packages compression) #:select (zlib)) #:use-module ((gnu packages perl) #:select (perl)) @@ -117,7 +118,7 @@ for MySQL.") (license license:gpl2+))) (define-public gn-guile - (let ((commit "7af301caa7d8a5f01e7e3be007e4ba53dc482eee") + (let ((commit "99cf7800246f6af0df8407f7595641933891ad85") (revision "0")) (package (name "gn-guile") @@ -130,33 +131,82 @@ for MySQL.") (file-name (string-append name "-" version)) (sha256 (base32 - "0j6nf9k5rdanx5r74dw1rcw7rvyjhzvsv1l5s86jkgkhvrpbb82c")))) + "0sxg3cd69g2sik1x4di20b4da2qn64d82ikmfkas5w2x1nq3r6pj")))) (build-system guile-build-system) - (propagated-inputs + (native-inputs (list guile-3.0)) + (inputs (list guile-3.0 guile3-dbi guile3-dbd-mysql guile-fibers guile-gnutls guile-readline guile-commonmark guile-redis openssl nss-certs gemma parallel guile-hashing - guile-json-4)) + guile-json-4 bash-minimal)) (arguments (list + #:not-compiled-file-regexp "(guix|guix/.*)[.]scm$" + #:modules '((srfi srfi-1) + (ice-9 popen) + (guix build guile-build-system) + (guix build utils)) #:phases #~(modify-phases %standard-phases - ;; When using the guile-build-system, guild doesn't - ;; correctly set the GUILE_LOAD_PATH for the various guile - ;; packages in the build phase leading to build failures. - (add-before 'build 'augment-GUILE_LOAD_PATH - (lambda* (#:key outputs #:allow-other-keys) - (let* ((guile-version (target-guile-effective-version))) - ;; guild uses this: "\\.(scm|sls)$" regexp to try and - ;; compile all scm files in this repository. We don't - ;; need to compile guix.scm and manifest.scm. - (delete-file "guix.scm") - (setenv "GUILE_LOAD_PATH" - (format - #f "~{~a:~}" - (map (lambda (package) - (format #f "~a/share/guile/site/~a" - package guile-version)) - (list #$guile3-dbi #$guile-fibers #$guile-commonmark #$guile-json-4 #$guile-hashing)))))))))) + (add-after 'build 'install-script + (lambda* _ + (let* ((bash #$(this-package-input "bash-minimal")) + (bash (string-append bash "/bin/bash")) + (guile #$(this-package-input "guile")) + (guile (string-append guile "/bin/guile")) + (build-guile #$(this-package-native-input "guile")) + (build-guile (string-append build-guile "/bin/guile")) + (guile3-dbi #$(this-package-input "guile3-dbi")) + (guile3-dbd-mysql #$(this-package-input "guile3-dbd-mysql")) + (guile-fibers #$(this-package-input "guile-fibers")) + (guile-gnutls #$(this-package-input "guile-gnutls")) + (guile-readline #$(this-package-input "guile-readline")) + (guile-commonmark #$(this-package-input "guile-commonmark")) + (guile-redis #$(this-package-input "guile-redis")) + (guile-hashing #$(this-package-input "guile-hashing")) + (guile-json-4 #$(this-package-input "guile-json")) + (out #$output) + (bin (string-append out "/bin")) + (effective (read + (open-pipe* OPEN_READ + build-guile "-c" + "(write (effective-version))"))) + (path (list (string-append guile "/bin"))) + (webserver (string-append + out + "/share/guile/site/" + effective + "/web/webserver.scm")) + (scm-dir (string-append "/share/guile/site/" effective)) + (guile-inputs (list guile3-dbi + guile3-dbd-mysql + guile-fibers + guile-gnutls + guile-readline + guile-commonmark + guile-redis + guile-hashing + guile-json-4)) + (scm-path + (map (lambda (x) (string-append x scm-dir)) + (cons* out guile-inputs))) + (go-dir (string-append "/lib/guile/" effective + "/site-ccache/")) + (go-path + (map (lambda (x) (string-append x go-dir)) + (cons* out guile-inputs)))) + (mkdir-p "bin") + (copy-file "gn-guile.sh" "bin/gn-guile") + (substitute* "bin/gn-guile" + (("@SHELL@") bash) + (("web/webserver.scm") webserver)) + (chmod "bin/gn-guile" #o755) + (install-file "bin/gn-guile" bin) + (wrap-script + (string-append out "/bin/gn-guile") + `("PATH" ":" prefix ,path) + `("GUILE_AUTO_COMPILE" ":" = ("0")) + `("GUILE_LOAD_PATH" ":" prefix ,scm-path) + `("GUILE_LOAD_COMPILED_PATH" ":" prefix ,go-path)))))))) (home-page "https://git.genenetwork.com/gn-guile") (synopsis "Next generation GN code in guile") (description "Use of guile.") |