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authorMunyoki Kilyungi2024-12-17 18:08:09 +0300
committerMunyoki Kilyungi2024-12-17 18:09:00 +0300
commit823014e2d05920caaec1487c42d6c8a795724b7d (patch)
treea74886faeea4b9c42377eb021ec0e330f54f58ea
parented658666041947ad1bc04590949e9e25b57cf8c8 (diff)
downloadguix-bioinformatics-823014e2d05920caaec1487c42d6c8a795724b7d.tar.gz
Update gn-guile script.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
-rw-r--r--gn/packages/guile.scm92
1 files changed, 71 insertions, 21 deletions
diff --git a/gn/packages/guile.scm b/gn/packages/guile.scm
index 824350c..3396d8d 100644
--- a/gn/packages/guile.scm
+++ b/gn/packages/guile.scm
@@ -6,6 +6,7 @@
#:use-module (guix build-system guile)
#:use-module (guix build-system gnu)
#:use-module ((gnu packages autotools) #:select (libltdl autoconf automake libtool))
+ #:use-module ((gnu packages bash) #:select (bash-minimal))
#:use-module ((gnu packages databases) #:select (mariadb))
#:use-module ((gnu packages compression) #:select (zlib))
#:use-module ((gnu packages perl) #:select (perl))
@@ -117,7 +118,7 @@ for MySQL.")
(license license:gpl2+)))
(define-public gn-guile
- (let ((commit "7af301caa7d8a5f01e7e3be007e4ba53dc482eee")
+ (let ((commit "99cf7800246f6af0df8407f7595641933891ad85")
(revision "0"))
(package
(name "gn-guile")
@@ -130,33 +131,82 @@ for MySQL.")
(file-name (string-append name "-" version))
(sha256
(base32
- "0j6nf9k5rdanx5r74dw1rcw7rvyjhzvsv1l5s86jkgkhvrpbb82c"))))
+ "0sxg3cd69g2sik1x4di20b4da2qn64d82ikmfkas5w2x1nq3r6pj"))))
(build-system guile-build-system)
- (propagated-inputs
+ (native-inputs (list guile-3.0))
+ (inputs
(list guile-3.0 guile3-dbi guile3-dbd-mysql guile-fibers guile-gnutls guile-readline
guile-commonmark guile-redis openssl nss-certs gemma parallel guile-hashing
- guile-json-4))
+ guile-json-4 bash-minimal))
(arguments
(list
+ #:not-compiled-file-regexp "(guix|guix/.*)[.]scm$"
+ #:modules '((srfi srfi-1)
+ (ice-9 popen)
+ (guix build guile-build-system)
+ (guix build utils))
#:phases
#~(modify-phases %standard-phases
- ;; When using the guile-build-system, guild doesn't
- ;; correctly set the GUILE_LOAD_PATH for the various guile
- ;; packages in the build phase leading to build failures.
- (add-before 'build 'augment-GUILE_LOAD_PATH
- (lambda* (#:key outputs #:allow-other-keys)
- (let* ((guile-version (target-guile-effective-version)))
- ;; guild uses this: "\\.(scm|sls)$" regexp to try and
- ;; compile all scm files in this repository. We don't
- ;; need to compile guix.scm and manifest.scm.
- (delete-file "guix.scm")
- (setenv "GUILE_LOAD_PATH"
- (format
- #f "~{~a:~}"
- (map (lambda (package)
- (format #f "~a/share/guile/site/~a"
- package guile-version))
- (list #$guile3-dbi #$guile-fibers #$guile-commonmark #$guile-json-4 #$guile-hashing))))))))))
+ (add-after 'build 'install-script
+ (lambda* _
+ (let* ((bash #$(this-package-input "bash-minimal"))
+ (bash (string-append bash "/bin/bash"))
+ (guile #$(this-package-input "guile"))
+ (guile (string-append guile "/bin/guile"))
+ (build-guile #$(this-package-native-input "guile"))
+ (build-guile (string-append build-guile "/bin/guile"))
+ (guile3-dbi #$(this-package-input "guile3-dbi"))
+ (guile3-dbd-mysql #$(this-package-input "guile3-dbd-mysql"))
+ (guile-fibers #$(this-package-input "guile-fibers"))
+ (guile-gnutls #$(this-package-input "guile-gnutls"))
+ (guile-readline #$(this-package-input "guile-readline"))
+ (guile-commonmark #$(this-package-input "guile-commonmark"))
+ (guile-redis #$(this-package-input "guile-redis"))
+ (guile-hashing #$(this-package-input "guile-hashing"))
+ (guile-json-4 #$(this-package-input "guile-json"))
+ (out #$output)
+ (bin (string-append out "/bin"))
+ (effective (read
+ (open-pipe* OPEN_READ
+ build-guile "-c"
+ "(write (effective-version))")))
+ (path (list (string-append guile "/bin")))
+ (webserver (string-append
+ out
+ "/share/guile/site/"
+ effective
+ "/web/webserver.scm"))
+ (scm-dir (string-append "/share/guile/site/" effective))
+ (guile-inputs (list guile3-dbi
+ guile3-dbd-mysql
+ guile-fibers
+ guile-gnutls
+ guile-readline
+ guile-commonmark
+ guile-redis
+ guile-hashing
+ guile-json-4))
+ (scm-path
+ (map (lambda (x) (string-append x scm-dir))
+ (cons* out guile-inputs)))
+ (go-dir (string-append "/lib/guile/" effective
+ "/site-ccache/"))
+ (go-path
+ (map (lambda (x) (string-append x go-dir))
+ (cons* out guile-inputs))))
+ (mkdir-p "bin")
+ (copy-file "gn-guile.sh" "bin/gn-guile")
+ (substitute* "bin/gn-guile"
+ (("@SHELL@") bash)
+ (("web/webserver.scm") webserver))
+ (chmod "bin/gn-guile" #o755)
+ (install-file "bin/gn-guile" bin)
+ (wrap-script
+ (string-append out "/bin/gn-guile")
+ `("PATH" ":" prefix ,path)
+ `("GUILE_AUTO_COMPILE" ":" = ("0"))
+ `("GUILE_LOAD_PATH" ":" prefix ,scm-path)
+ `("GUILE_LOAD_COMPILED_PATH" ":" prefix ,go-path))))))))
(home-page "https://git.genenetwork.com/gn-guile")
(synopsis "Next generation GN code in guile")
(description "Use of guile.")