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authorPjotr Prins2024-04-03 04:08:07 -0500
committerPjotr Prins2024-04-03 04:08:07 -0500
commit5871a33c424510c9fad10a240d355dfb31b027e7 (patch)
treecb50e866bb65f8ef5798b05b3e044bab549f9e00
parent4bce9fa4e3ebc3036ec94207b392d0c5b5d869d1 (diff)
downloadguix-bioinformatics-5871a33c424510c9fad10a240d355dfb31b027e7.tar.gz
genenetwork3-stable: patch path to R script
-rw-r--r--gn/packages/genenetwork.scm10
1 files changed, 8 insertions, 2 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index 2053e78..a0c8a57 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -348,7 +348,7 @@
(license license:agpl3+))))
(define-public genenetwork3-stable
- (let ((commit "c094d2db352a39cc001b21ad4195fc32de24c863")
+ (let ((commit "8414f1d74f6b09205d3cfd09240c787323474626")
(revision "1"))
(package
(inherit genenetwork3)
@@ -356,7 +356,13 @@
(version (string-append "stable-" (git-version "3.11" revision commit)))
(arguments
(list
- #:tests? #f)) ; temporary disable on production setup
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'build 'update-paths
+ (lambda _
+ (substitute* "gn3/api/rqtl.py"
+ (("scripts/rqtl_wrapper.R)"
+ (string-append #$output "/scripts/rqtl_wrapper.R"))))))))
(source
(git-checkout
(url "https://github.com/genenetwork/genenetwork3")