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| author | Arun Isaac | 2025-04-28 14:11:56 +0100 |
|---|---|---|
| committer | Arun Isaac | 2025-04-29 01:35:24 +0100 |
| commit | 401dc17c1f6d182b4ff74a4e5e906c2950cbe090 (patch) | |
| tree | f1f1e9fd495c124a5ac745013f9ba4aadfb3200e | |
| parent | e232b44cb7aade478cfcbe32e984b45e63c4879c (diff) | |
| download | guix-bioinformatics-401dc17c1f6d182b4ff74a4e5e906c2950cbe090.tar.gz | |
gn: vg: Update to 1.65.0.
* gn/packages/bioinformatics.scm (vg): Update to 1.65.0.
[arguments]: Substitute full path to vg in build-manpages phase.
[native-inputs]: Add ghc-pandoc and python.
| -rw-r--r-- | gn/packages/bioinformatics.scm | 10 |
1 files changed, 8 insertions, 2 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index 5ccd5b5..4a85cff 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -56,6 +56,7 @@ #:use-module (gnu packages graph) #:use-module (gnu packages gtk) #:use-module (gnu packages guile) + #:use-module (gnu packages haskell-xyz) #:use-module (gnu packages image) #:use-module (gnu packages imagemagick) #:use-module (gnu packages java) @@ -2339,14 +2340,14 @@ in-memory footprint at the cost of packing and unpacking.") (define-public vg (package (name "vg") - (version "1.61.0") + (version "1.65.0") (source (origin (method url-fetch) (uri (string-append "https://github.com/vgteam/vg/releases/download/v" version "/vg-v" version ".tar.gz")) (sha256 - (base32 "1yb8ffqq65ma5di42qlj483x42viq5j4xyyg3vpww60gm15n1yxx")) + (base32 "022wiz0rs1x90nk9zaxcf8szhma8kzygnbfhciq9166kjysd0pc6")) (snippet #~(begin (use-modules (guix build utils)) @@ -2507,6 +2508,9 @@ in-memory footprint at the cost of packing and unpacking.") ((".*test-docs.*") ""))))) (add-after 'build 'build-manpages (lambda* (#:key make-flags #:allow-other-keys) + ;; vg is not in PATH. Replace it with full path. + (substitute* "doc/vgmanmd.py" + (("'vg'") "'./bin/vg'")) (apply invoke "make" "man" make-flags))) (replace 'install (lambda* (#:key outputs #:allow-other-keys) @@ -2527,9 +2531,11 @@ in-memory footprint at the cost of packing and unpacking.") bash-tap bc cmake-minimal + ghc-pandoc jq perl pkg-config + python samtools util-linux which |