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| author | pjotrp | 2025-03-19 10:33:27 +0100 |
|---|---|---|
| committer | pjotrp | 2025-03-19 10:33:27 +0100 |
| commit | 34e3aca6eec438dc737601e58dd1c4d1bcdb05a6 (patch) | |
| tree | 45dd44c8cab17888e9b84ab93decab1ea735554a | |
| parent | ca80985cf9cba893861f0f5ffb920273dcb59c3a (diff) | |
| download | guix-bioinformatics-34e3aca6eec438dc737601e58dd1c4d1bcdb05a6.tar.gz | |
| -rw-r--r-- | gn/packages/bioinformatics.scm | 1 | ||||
| -rw-r--r-- | gn/packages/r-shiny.scm | 47 |
2 files changed, 48 insertions, 0 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index ef30d23..02c979d 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -4594,6 +4594,7 @@ interface to the basic htslib. It can be easily included in a C++ program for scripting high-performance genomic analyses.") (license license:asl2.0))) + (define-public r-stitch (package (name "r-stitch") diff --git a/gn/packages/r-shiny.scm b/gn/packages/r-shiny.scm index 898ee72..c2e61a6 100644 --- a/gn/packages/r-shiny.scm +++ b/gn/packages/r-shiny.scm @@ -1,6 +1,10 @@ (define-module (gn packages r-shiny) #:use-module ((guix licenses) #:prefix license:) + #:use-module (guix download) + #:use-module (guix build-system r) #:use-module (guix packages) + #:use-module ((guix licenses) #:prefix license:) + #:use-module (gnu packages bioconductor) #:use-module (gnu packages cran) #:use-module (gnu packages javascript)) @@ -12,3 +16,46 @@ (define-public js-es5-shim-2 (deprecated-package "js-es5-shim" js-es5-shim)) + + +(define-public r-runit + (package + (name "r-runit") + (version "0.4.33") + (source + (origin + (method url-fetch) + (uri (cran-uri "RUnit" version)) + (sha256 + (base32 "0pybwvd57vf71vvlxdrynw5n6s5gnbqnwvq0qpd395ggqypwb95j")))) + (properties `((upstream-name . "RUnit"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/package=RUnit") + (synopsis "R Unit Test Framework") + (description + "R functions implementing a standard Unit Testing framework, with additional code +inspection and report generation tools.") + (license license:gpl2))) + +(define-public r-org-rn-eg-db ; used by jumpshiny service + (package + (name "r-org-rn-eg-db") + (version "3.20.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "org.Rn.eg.db" version 'annotation)) + (sha256 + (base32 + "009c22ry5nnklzdc5dywnf8lq41cj3141yr5vw1kgifys6lanj01")))) + (properties + `((upstream-name . "org.Rn.eg.db"))) + (build-system r-build-system) + (propagated-inputs + (list r-annotationdbi)) + (native-inputs (list r-runit)) + (home-page "https://www.bioconductor.org/packages/org.Rn.eg.db/") + (synopsis "Genome wide annotation for Rat") + (description + "This package provides mappings from Entrez gene identifiers to various +annotations for the genome of the rat.") + (license license:artistic2.0))) |