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authorpjotrp2024-04-01 15:17:17 +0200
committerpjotrp2024-04-01 15:17:17 +0200
commit10f9f0f19a0bb8c354ee68f0479edf606e3a2dd1 (patch)
treeb4fc4525ff20417ec7878b1e26568ea0d660c50f
parente200b1c3ea52776bbc701f9912d0fcbc86b79a2e (diff)
downloadguix-bioinformatics-10f9f0f19a0bb8c354ee68f0479edf606e3a2dd1.tar.gz
gn: genenetwork3: sorted package names and moved python-test and python-test-mock into propagated inputs
* gn/packages/genenetwork.scm (genenetwork3) [propagated-inputs]: add testing
-rw-r--r--gn/packages/genenetwork.scm161
1 files changed, 81 insertions, 80 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index d89852d..d05d9f5 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -133,17 +133,14 @@
(list python-hypothesis
python-mypy
python-mypy-extensions
- python-pylint
- python-pytest
- python-pytest-mock))
+ python-pylint))
(propagated-inputs
- (list gemma-wrapper
- python-wrapper
- csvdiff
+ (list csvdiff
diffutils
+ gemma-wrapper
gn-rust-correlation
- python-authlib
python-argon2-cffi
+ python-authlib
python-bcrypt ;; Replace use of bcrypt with argon
python-biopython
python-email-validator
@@ -157,11 +154,14 @@
python-plotly
python-pyld
python-pymonad
+ python-pytest
+ python-pytest-mock
python-redis
python-requests
python-scikit-learn
python-scipy
python-sparqlwrapper
+ python-wrapper
python-xapian-bindings
r
r-ctl
@@ -203,103 +203,104 @@
(list graphviz))
(propagated-inputs
(list genenetwork3
- parallel
coreutils
- git
- which
- grep
- r
- r-ctl
- r-qtl
- r-wgcna
- redis
- mariadb
gemma
gemma-wrapper
- plink-ng-gn
- rust-qtlreaper
- gn-rust-correlation
+ git
glibc-utf8-locales
- nginx
- python-wrapper
- python-pillow
- python-coverage
- python-configparser
- python-flask
+ gn-rust-correlation
+ grep
gunicorn
+ javascript-bootstrap
+ javascript-chroma
+ javascript-ckeditor
+ javascript-colorbox
+ javascript-cytoscape
+ javascript-cytoscape-panzoom
+ javascript-cytoscape-qtip
+ javascript-d3-tip
+ javascript-d3js
+ javascript-datatables
+ javascript-datatables-buttons
+ javascript-datatables-buttons-bootstrap
+ javascript-datatables-buttons-styles
+ javascript-datatables-col-reorder
+ javascript-datatables-col-resize
+ javascript-datatables-plugins
+ javascript-datatables-scroller
+ javascript-font-awesome
+ javascript-htmx
+ javascript-jquery
+ javascript-jquery-cookie
+ javascript-jquery-ui
+ javascript-jscolor
+ javascript-jszip
+ javascript-linkify
+ javascript-linkify-html
+ javascript-nouislider
+ javascript-nvd3
+ javascript-plotly
+ javascript-purescript-genome-browser
+ javascript-qtip2
+ javascript-shapiro-wilk
+ javascript-twitter-post-fetcher
+ javascript-typeahead
+ javascript-uikit
+ javascript-underscore-string
+ javascript-zxcvbn
+ js-jstat
+ js-md5
+ js-parsley
+ js-smart-time-ago
+ js-underscore
+ mariadb
+ nginx
+ parallel
+ plink-ng-gn
+ python-authlib
python-autopep8
+ python-beautifulsoup4
+ python-configparser
+ python-coverage
python-cssselect
+ python-flask
python-flask-debugtoolbar
+ python-flask-session
python-htmlgen
python-ijson
python-jinja2
- python-pytest
- python-pytest-mock
- python-sqlalchemy
- python-setuptools
- python-scipy
python-lxml
- python-mysqlclient
+ python-markdown
python-mypy
+ python-mysqlclient
python-numpy
python-pandas
+ python-pillow
python-pylint
python-pymonad
+ python-pytest
+ python-pytest-mock
+ python-rdflib
python-redis
python-requests
- python-simplejson
- python-markdown
- python-rdflib
- python-authlib
- python-flask-session
python-rpy2
- python-beautifulsoup4
+ python-scipy
+ python-setuptools
+ python-simplejson
+ python-sqlalchemy
+ python-wrapper
python-xlsxwriter
- javascript-twitter-post-fetcher
- javascript-cytoscape
- javascript-cytoscape-panzoom
- javascript-cytoscape-qtip
- javascript-chroma
- javascript-d3-tip
- javascript-jscolor
- javascript-colorbox
- javascript-jszip
- js-jstat
- js-md5
- js-parsley
- javascript-plotly
- javascript-typeahead
- js-underscore
- javascript-uikit
- js-smart-time-ago
- javascript-nouislider
- javascript-purescript-genome-browser
- javascript-ckeditor
- javascript-datatables
- javascript-datatables-scroller
- javascript-datatables-buttons
- javascript-datatables-buttons-bootstrap
- javascript-datatables-plugins
- javascript-datatables-col-reorder
- javascript-datatables-col-resize
- javascript-datatables-buttons-styles
- javascript-shapiro-wilk
- javascript-underscore-string
- javascript-htmx
- javascript-qtip2
- javascript-d3js
- javascript-nvd3
- javascript-bootstrap
- javascript-jquery
- javascript-zxcvbn
- javascript-jquery-ui
- javascript-jquery-cookie
- javascript-linkify
- javascript-linkify-html
+ r
+ r-ctl
+ r-qtl
+ r-wgcna
+ redis
+ rust-qtlreaper
+ which
; javascript-xterm -- disabled until we know what to do with it, not working on production
; javascript-xterm-style
; javascript-xterm-addon-fit
- javascript-font-awesome))
+ ))
(inputs
(list javascript-colorbox))
(build-system python-build-system)